Halomonas binhaiensis: E4T21_07320
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Entry
E4T21_07320 CDS
T08791
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hbh
Halomonas binhaiensis
Pathway
hbh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E4T21_07320 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbh03019
]
E4T21_07320 (rne)
03009 Ribosome biogenesis [BR:
hbh03009
]
E4T21_07320 (rne)
Enzymes [BR:
hbh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E4T21_07320 (rne)
Messenger RNA biogenesis [BR:
hbh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E4T21_07320 (rne)
Ribosome biogenesis [BR:
hbh03009
]
Prokaryotic type
rRNA processing factors
E4T21_07320 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QEM81367
UniProt:
A0A5C1NGP7
LinkDB
All DBs
Position
complement(1681923..1685171)
Genome browser
AA seq
1082 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GAERHGFLPLKEVAREYFLKDPSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGEERSQLKEAMGQLTVPDKMGLIVRTAGIGRSPEELQW
DLDYLVQVWESITEEAGKRPAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEVHQEALG
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYEREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMGPSRNQREVENRA
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCDGQGTIRDVRSLSLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRAILADIERRQGVRLVVLPNPEMDTPHY
DVQRLRDDHVDEEGTAQVSSFELSVETEVGKEPEATFGKPIQRTEAAVKTVVHHEPAPAS
LQKQESAERRATAAPAPQVTAGVQNAGLFGRLVRGFARFLGNEEQQQAAGDQGQQSQGQE
TQTPASRDSESRQDNRQRSRRSSSNSQQRQSRSSSRQDSRSENRQSQESSSSQDSRRQQE
RRDNDRRQQERRQDSNRDSRSEKSEKSEGRSSRSRRSQDDTRTSQSRGSESQVRESVQKS
ETVVAETPKESKPKRTRNNPRSRTRTHAINPESLAEQQRLKALAAEAPAVADDSLAKAPA
VETKPAEYKSDTKAKDKTKADSQADKLKVEEKVEATTDARADKPKVEEKVETTTDARADK
PKVEEKVETTTDAQAGKPKVEEKVETTTDARADKPKVEEKVEAATIAQADKSKAEEKVET
TTDTPVDKPKVEEKVETTTDAQADKPKVEKKVETTTDARADKPKVEVKVEATTIAQADKP
KVEEKVQATTDAQADKPKVEEKVQATTAAQTDKPKVEEKVEATTVAQADKPKVEEKAEAT
ADVLVNKSKVEPQPDISVTEASSLETTETTTQSRRRRRRAHNDPREQRRREQQVQTGDSQ
QN
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaacgcgactcagcccgaagagctgcgcgtcgcactggtcgat
ggacaacgcctctacgatctggacatcgaatccggtgcccgagaacagaaaaaagccaat
atttaccgcggcaagatcacacgcgtagaaccctctctcgaagccgccttcgtcgacttt
ggtgctgaacgccacggcttcctgcccctcaaggaagtggcacgcgaatacttcctcaag
gacccctctggccgacctagcatcaaggaagttctcaaggaaggccaggaagtcatcgtc
caggttgacaaggaagagcgaggcaacaagggggccgcgctgacaaccttcatcagcctg
gctggccgcttccttgtcctgatgcccaacaaccctcgcgcgggaggaatttcacgtcgc
atcgagggtgaagaacgcagtcagctcaaggaagccatgggccaactgacggtccccgac
aagatgggcctgatcgtgcgcactgcaggcatcgggcgctcgccggaagaattgcagtgg
gacctggattatctggtgcaggtatgggagtcgatcaccgaagaagctggcaagcgcccc
gcccccttcctcatctaccgcgaatccaatgtcatcatccgcgccatgcgcgactatctg
cgccaggacattggcgaggtgctgatcgacagccctgaggtacatcaggaagccctgggc
tttatccgccaggtcatgccgtcctatcagcaaaagatcaagctctacgctgatgaagtc
ccgcttttctcacgcttccagatcgagtcacagatcgagacggcttacgagcgtgaagtg
aagctgccgtctggtggctccattgtcatcgaccacactgaagccctggtctccatcgac
atcaactctgcacgagcgactcgcggcagcgatatcgaggaaaccgccctgcagaccaac
ctggaggcggccgacgaaattgctcgccaattgcgtctgcgtgacattggtggcctcgtg
gtcatcgatttcatcgacatggggccatcacgcaatcagcgcgaagtggaaaaccgagcg
cgtgatgctctcaagctcgaccgcgcccgggtacagatcggtcgcatttcccgctttggc
ctgatggagatgtcacgccagcgcctgcgcccgtctcttggagagaccagtggcgtcgtc
tgccctcgctgcgatggccagggcactatccgagacgtacgctccctgtcgctgtcgatc
atgcgtctgatcgaagaagaagcgatgaaggagcgtagtgctcagattcgtgccatcctg
ccggtccctgtggccacctacctgctcaatgagaaacgtgcaatactggcagacattgaa
cgccgtcaaggtgtgcgcctggtagtgctgcccaatcccgaaatggatacgcctcactac
gacgttcagcgtctacgtgacgatcatgtggatgaggaaggcacagctcaggtttcaagc
ttcgagttatcggtggagaccgaagtcggcaaagagccagaagccaccttcggaaaaccc
atacagcgcaccgaagcggcagtgaagactgtggtccatcacgagcccgcaccagcttcc
ctgcagaagcaagagtccgccgaacgtcgtgcgacagcagcacccgcaccacaggtcaca
gcaggcgttcagaatgcaggcctgttcggtcgactagtgcgtggcttcgcccgattcctg
ggcaatgaggaacagcaacaggctgctggtgatcagggacagcagtcccagggccaggag
actcagacacctgcaagtcgggacagcgagagccggcaggataatcgccagcgcagccgt
cgcagcagtagcaacagccagcagcgccaaagtcgctcatcatcacgccaagacagccgc
agcgagaaccgacagagtcaggaaagttcatcctcgcaggatagtcgtcgccagcaggag
cgtcgcgacaatgatcgccggcagcaggagcgtcgacaggacagcaatcgcgatagccgc
agcgaaaagagtgaaaagtctgagggacgcagcagccgttcgcgtcgcagccaggatgat
actcggaccagccagtccagaggctcagagagccaggtccgcgagagcgtgcagaaaagc
gagacggtagtggcggagactcccaaggagtccaagcccaagcgcactcgcaataacccg
cgcagtcgcacacgcacccatgcgatcaaccctgaatcgcttgctgagcagcaacgcctg
aaagccttggcagcagaagcccccgcagttgcggacgacagcctggccaaagcaccagca
gtagaaacaaagccggcggaatacaagagcgacaccaaggcgaaggacaagaccaaggct
gattcccaagccgacaagctcaaggtcgaggaaaaggtcgaagctactaccgacgctcgt
gctgacaagcccaaggtcgaggaaaaggtcgaaaccactaccgacgcccgtgctgacaag
cccaaggtcgaggaaaaggtcgaaaccactaccgacgcccaggctggcaagcccaaggtc
gaggaaaaggtcgaaaccactaccgacgcccgtgctgacaagcccaaggtcgaggaaaag
gtcgaagccgctaccatcgcccaggccgacaagtccaaggcagaggaaaaggtcgaaacc
actaccgacaccccggtcgacaagcccaaggtcgaggaaaaggtcgaaaccactaccgac
gcccaggctgacaagcccaaggtcgagaaaaaggtcgaaaccactaccgacgcccgtgct
gacaagcccaaggtcgaggtaaaggtcgaagccactaccatcgcccaggccgacaagccc
aaggtcgaggaaaaggttcaagccactaccgacgcccaggctgacaagcccaaggtcgag
gaaaaggttcaagccactaccgccgcccagactgacaagcccaaggtcgaggaaaaagtt
gaagccactaccgtcgcccaggctgacaagcccaaggtcgaggaaaaggctgaagctact
gctgacgttctggtcaataagtccaaggtcgaaccacaacccgatatttcagtgacagag
gcatcttccctggaaacgacagagaccacgacacaatcacgccgtcgtcgccgtcgcgcc
cataacgaccctcgcgaacaacgccgtcgcgagcaacaggtccagacgggagatagccag
cagaattga
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