Helicobacter bizzozeronii: HBZC1_02170
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Entry
HBZC1_02170 CDS
T01540
Name
(GenBank) cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hbi
Helicobacter bizzozeronii
Pathway
hbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HBZC1_02170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbi03019
]
HBZC1_02170
03009 Ribosome biogenesis [BR:
hbi03009
]
HBZC1_02170
Enzymes [BR:
hbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HBZC1_02170
Messenger RNA biogenesis [BR:
hbi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HBZC1_02170
Ribosome biogenesis [BR:
hbi03009
]
Prokaryotic type
rRNA helicases
HBZC1_02170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
UvrD-helicase
AAA_30
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
CCB79203
UniProt:
F8KR30
LinkDB
All DBs
Position
204353..205765
Genome browser
AA seq
470 aa
AA seq
DB search
MPEQNPTPQTPKPSDIAPRSFKDLGLNARILKSIAEVGFTQPSPIQEKAIPAVLEGKDVI
AQAQTGTGKTAAFALPIIQNLKNDKSIEALVITPTRELAMQISDEVFKLGKNSRTRTICV
YGGQSIKKQCELLERNPQVMIATPGRLLDHLKNKRLKNFSPKVVVLDESDEMLDMGFLDD
IEEIFDYLPSEAQILLFSATMPPPIRDLANKILQDPISIHIAPTHVTNTDISQRFYVINE
HERNEAIMRLLDKENHTKSIIFMRMKREVDELHQFLSAKGYKSTPLHGDMEQRARRESIQ
AFKTKRADVLVATDVASRGLDISDVSHVFNYHLPLNTESYIHRIGRTGRAGKKGVAITLV
TPLEYKELLRMQKEIGSSIELYEIPNMDEDRLVQALNKVEVDAEVVSLYEQLTEQFEPSQ
LVLKLLSLQFKSHKINLEEVLHTRTPTPHASKGKFSKPHGRSSHKNRTRR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgccagaacaaaaccccaccccccaaacccccaaaccatcagatattgcgccccgctct
tttaaagatttgggcttaaatgcgcggattttaaaatccatcgccgaagtgggtttcacc
caacctagccccatccaagaaaaggcaatccccgctgttttagagggcaaagatgtgatc
gcccaagcccaaacgggcacgggcaaaaccgccgcctttgccctacccattatccaaaat
ctcaaaaatgacaagagcattgaggctttggtgatcacgcccactagagagcttgccatg
caaattagcgatgaggtctttaaattgggtaagaattcccgcacccgcaccatttgcgtc
tatggcgggcagagtatcaaaaaacaatgcgagcttttggaacgcaacccccaagtgatg
atcgccacgcccggtcgcctcttagatcacctcaaaaacaaacggctcaaaaacttctcc
cctaaagtggtggtgcttgatgagagcgatgagatgttggacatgggctttttagatgat
attgaagagatttttgactacctccccagcgaggcacagattttattgttttccgccacc
atgcccccccccattcgggatttagccaataagattttacaagacccgatctctatccac
atcgcccccacccatgtaaccaacaccgacatctcccagcgattctatgtgatcaacgaa
catgaacgcaacgaggcgatcatgcgtttgctagataaagaaaaccacaccaagagcatt
atttttatgcgtatgaaaagagaagttgatgaattgcaccaatttttgagtgccaagggc
tataaaagcacgcctttacatggcgacatggagcaacgcgcccgcagagaatcgatccaa
gcctttaaaaccaagcgtgccgatgtgttggtcgctaccgatgtggctagccgggggttg
gatattagcgatgtgagccatgtctttaattaccatttgcccttaaataccgaaagttat
atccaccgcatcgggcgcacggggcgtgcgggcaaaaagggcgtggcgatcactttagta
acccccctagaatataaagagcttttacgcatgcaaaaagagatcggctctagcattgag
ctttatgaaatccccaacatggacgaggatcgcttggtgcaagccttaaacaaggttgaa
gtggatgcggaagtggtgagtttatacgaacaactcaccgagcaatttgagccctcccaa
ctagtcttaaaacttttgagtttgcaatttaaaagccacaagatcaacctagaggaggtc
ctccacacccgcacacccacaccccacgcctctaagggcaaatttagcaaaccacatggg
cgatcctctcataaaaaccgcacaaggagataa
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