Helicobacter bizzozeronii: HBZC1_04730
Help
Entry
HBZC1_04730 CDS
T01540
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hbi
Helicobacter bizzozeronii
Pathway
hbi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HBZC1_04730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbi03400
]
HBZC1_04730
Enzymes [BR:
hbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HBZC1_04730
DNA repair and recombination proteins [BR:
hbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HBZC1_04730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
CCB79459
UniProt:
F8KRS1
LinkDB
All DBs
Position
443122..446106
Genome browser
AA seq
994 aa
AA seq
DB search
MIQASFYVALQAFCNQILIVQDSLEAREVLQVWRFFRPHSLAFVLPDLRARYLDDMRAFS
TELQELLTQLRLFYQAKEHGQDCLLIAPLSALLHPLPQSCLLQSFSLECLESYDLSTLKE
DLSRYGYEFVEVVELPGEASFRGDIVDIFIPGQELPHRLGFLGDACEDIKRFDPRTQLSQ
PELIESIEIAPALFSLTEQQRAQMQARLEALKSDALILDIASLGFWVLGDLGVDFLSTYS
AILTPKALEEAQELSSLESLKSLERALKLPVLATPPKCQNLQVSLDQLHDFLELNQHRKI
TLLAKDQSLIPPLPKIALEVVISDCVLHFATPTQIFLSLHGYAKQQARRRSKLILDELVL
GDYVVHADYGVGKFQGLVQNSVLGSVRDFLALEYGNHDRLLLPVENLHLLDRYIAPGSPT
LDRLGKGSFAKLKAKLKAKLLDMATDIINLAATRNLIPGQVITPPTHALERFKHASGFAL
TSDQERSIAEILQDLASGKVMDRLLSGDVGFGKTEVAMHAIYALFLASKQSAFFVPTTLL
ANQHFNTLKTRLEPFGVRVAKLDRSSKPTEKKHILEGLKQGNLDVVVGTHALLGAKFANL
GLVVVDEEHKFGVKQKEAIKLLAQSVHCLSMSATPIPRTLSMALAHIKGMSFLATPPSYK
VPSRTFVKEKTPSLLKEIILRERRRGGQVFYIHNHIESMPQAKKNLTDLLPHLQIETLHA
KTPLQQSQDIMQAFEQGQLDILICTSIVESGLHLPNANTIIIDYADRFGLADLHQLRGRI
GRSHKEGFCYCLVENKEDLSPDALKRLVALEKNSDLGAGSSLALHDLEIRGSGNFLGQDQ
SGHIQNIGYGLYSKMLEQAIREKSGERVELKSVDLKLAVSGYLSADLIENDSLRLELYRR
LSLCSDLSSVRAIQEEIVDRFGPLDSMSAQFLQIIRVKILANLLGISKISQYAQRTTIFE
GNQQYTILAPSKDDSEVLQSLLENLQERLKKLPA
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgatccaagctagtttttatgtcgccctccaagccttttgcaaccaaattttaatcgtg
caagatagcctagaggctagggaggtgttgcaggtgtggcgttttttccgcccacattcc
ctagcctttgtcttgcctgatttgcgtgcccgttatttagatgacatgcgcgcctttagc
acggagcttcaagagcttttaacccagttgcgtttgttttaccaagccaaagaacacgga
caagattgcttgttgattgcccctttaagtgcgttgctacaccccctgccccaatcttgc
ttgctccaaagctttagcctagagtgtttagagagctatgatctaagcaccctcaaagag
gatttaagccgctatggttatgagtttgtggaggtggtggagttgcccggggaggctagc
tttagaggcgacattgtggatatttttatccccgggcaagagttgccccatcgtttgggc
tttttgggtgatgcgtgtgaggacattaaacgatttgatccacgcacccaacttagccag
cctgaactcatcgagagcatagagatcgcccccgcactttttagcctcactgagcaacag
agggcacaaatgcaagcacgcctagaggcattaaaaagcgatgccttgatccttgatatt
gcttctttgggcttttgggtgttgggcgatttgggggtggattttttaagcacttatagc
gctattctcacacccaaagccctagaggaggcacaagaactctccagcctagagtcttta
aagagtttggagcgtgccttaaaattgcccgtgttggccacgccccctaagtgccaaaat
ctgcaagtctctttagaccaactccatgactttttagagctcaaccagcaccgcaaaatc
accttgctagccaaagatcaaagcctgatcccccccttgcccaaaatagcccttgaggtg
gtcatttcagattgtgtcttgcattttgccacccccacacagatttttttatccttgcat
ggctatgccaagcaacaagcacgcaggcggtccaaattgatcctagatgaactagttttg
ggcgattatgtcgtgcatgcagattatggcgtgggtaagtttcagggcttggtgcaaaat
agcgttctagggagtgtgcgcgactttttagccctagagtatggcaatcacgatcgcctc
ttgctcccggtggaaaatttgcacctcttagatcgctatattgccccgggtagcccaact
ttagatcgcctaggtaagggcagttttgccaaactcaaggcaaaactcaaggcaaaatta
ctagacatggcaacagatattattaatctagcagccacgcgtaatttgattcccgggcag
gttatcacgccccccacacacgccctagagcgtttcaagcacgccagtgggtttgccctc
actagcgatcaagaacgcagtatcgccgagattttgcaagatttggctagtgggaaggtg
atggatcggctcttaagcggggatgtgggctttggcaagacagaagttgccatgcacgcc
atttatgcgctttttttagccagcaagcaaagtgcgttttttgtgcccaccacgctttta
gccaaccagcattttaacaccctcaaaacccgcttagaaccctttggtgtgcgtgtagcc
aagctagatcgttccagcaagcccacagaaaaaaagcacatcttagagggcttaaagcag
ggcaacttagatgtggtggttggcacgcatgccctcttgggggctaagtttgctaacttg
gggctggtggtggtggatgaagaacataaatttggggtcaagcaaaaggaggctatcaaa
ctcttagcccaaagcgtgcattgtttgagcatgtcagccacccctattcctagaacactt
agcatggcactcgcccacatcaagggcatgagtttcttagccaccccgcctagctataaa
gtccctagccgcacctttgtgaaagaaaaaacccccagtttgcttaaagagatcatttta
agggaacgcaggcggggcgggcaggtcttttatatccacaaccacattgagagcatgccc
caagctaaaaaaaatcttactgatctcttgccccatctgcagattgaaaccctgcatgcc
aaaacccccttacaacaaagccaagatattatgcaagcctttgagcaagggcaattagat
attttgatctgcacttcgatcgtggaatcgggcttacacctccccaatgccaatacaatc
atcatcgattacgccgatcgctttggcttggctgatttgcaccagcttagggggcgtata
ggcaggagccacaaagagggcttttgttattgcttggtggaaaacaaagaggatttaagc
ccagatgccctcaaacgcctagtggcgcttgaaaaaaatagcgatttgggggcgggctca
agcctagctttgcatgatttagaaattcgggggagtgggaattttttagggcaggatcag
agcgggcatatccaaaatatcgggtatgggctgtatagcaaaatgctagaacaagccatt
agggaaaagagcggggagagggtggaattaaaaagtgtggatttgaaattagcggtgagt
gggtatttgagcgcggatttgattgaaaatgatagtttgcgtttggagctttaccgccgt
ctgtccttgtgtagcgacttatccagtgtgcgggctatccaagaggagatcgtggatcgt
tttggtccgcttgattccatgagcgcgcaatttttgcagattatccgtgttaaaattttg
gctaacttgttaggcattagcaaaatctcccaatacgcccaacgcacaaccatttttgag
ggcaaccaacaatacacaatcctagcccccagtaaagacgactcggaagtgttgcaaagc
ctactggaaaatctgcaagaacgcttaaaaaaactccccgcttaa
DBGET
integrated database retrieval system
