Helicobacter bizzozeronii: HBZC1_04950
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Entry
HBZC1_04950 CDS
T01540
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K13797
DNA-directed RNA polymerase subunit beta-beta' [EC:
2.7.7.6
]
Organism
hbi
Helicobacter bizzozeronii
Pathway
hbi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hbi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HBZC1_04950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbi03021
]
HBZC1_04950
03400 DNA repair and recombination proteins [BR:
hbi03400
]
HBZC1_04950
Enzymes [BR:
hbi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HBZC1_04950
Transcription machinery [BR:
hbi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HBZC1_04950
DNA repair and recombination proteins [BR:
hbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HBZC1_04950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb2_6
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb2_7
RNA_pol_Rpb1_4
Alpha_E2_glycop
FliG_C
Motif
Other DBs
NCBI-ProteinID:
CCB79481
UniProt:
F8KQ25
LinkDB
All DBs
Position
complement(466433..470899)
Genome browser
AA seq
1488 aa
AA seq
DB search
MSAGMILVGKVSPKGEMKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIGVNILTK
KGYEKDARAISAYEEEKAVLDIEHYDRLTMLNREELLQISSIFSKEPLEEATTLNEVEYA
KGDRIPKEVVLEINRFALNSLAKKYKKEVQDRFEQIKANFLEQKKILGQEHEEKLSILEK
DDILPNGVIKQVKIYIATKRKLKVGDKMAGRHGNKGIVSNIVPIADMPYTADGEPVDIVL
NPLGVPSRMNIGQILEVHLGLVGKQLGDQISTLLEQHNTDMLKKLRAKMLEIAHVVNVDN
HDLAHMLEKCSDEVLLGYARDWSSGVKFAIPVFEGISGEQFMNLFKLAQIDLDGKTELYD
GRTGEKMKERVNVGYMYMLKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEME
VWALEAYGAAHTLKEMLTVKSDDIRGRENAYKAIARGEHVGESEIPETFYVLTKELQSLG
LDVNIFNEEVDEFGAPKPIVIKEDDRPKDFSSFQLTLASPEKIKEWSYGEVKKPETINYR
TLKPERDGLFCMKIFGPTKDYECLCGKYKKPRYKTIGTCEKCGVAITSSKVRSFRMGHIE
LATPVAHIWYVSSLPSRIGTLLGIKMKDLERVLYYEAYIVKEPGEAFYDNECTKPICKYD
ILNEEQFQSVARLNEDKGFVAHMGGEVIKDLLEELDLVALLRSLKEEVKETNSDAKKKKL
IKRLKVVESFLNSGNRPEWMMLTALPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQ
RLKRLMELGAPEIIVRNEKRMLQEAVDALFDNGRNANAVKGANKRPLKSLSEIIKGKQGR
FRQNLLGKRVDFSGRSVIVVGPNLRMDECGLPKNMALELFKPHLLSKLEEKGFATTLKQA
KRMIEQKSNEVWECLEEIVQGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAF
NADFDGDQMAVHVPLSQEAITECKVLMLSSMNILLPASGKAVAVPSQDMVLGLYYLSLEK
SGVLGEHKLFSSVHEVLMAVDSKVLDLHAKVRVLHDRHILHTTAGRLVLKSILPDFVPIH
LWNKMMTKKDIGALVDFVHKESGIGASARFLDNLKMLGFRYATKAGISISMEDIITPKNK
IRMVESAKEKVRAIQAQFEGGHLTTQERYNKIIDIWTEVNDQMSKEMMQAIAQDKEGFNS
IYMMANSGARGSAAQIRQLSAMRGLMTKPDGTIIETPIISNFKEGLNVLEYFNSTHGARK
GLADTALKTATAGYLTRKLIDVSQNVKVVQEDCGTHEGIEITDITVGSELIEPLEERIFG
RVLVEDIIDPLTNEVLLNADTMVDEEKAKKIIEAGIKSVTIRTPVTCKAQKGVCAKCYGL
NLGEGKMVKPGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASRSQEEHEIIANNEGFVRFF
NVKTYQNKEGKNIIVNRRNAAILVVEPKIKAPFAGVLKIDSAHLKRSF
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgcggggatgattttggtaggcaaggtctcccccaaaggcgagatgaaaagcacg
ccagaggagcgactcttgcgtgccatttttggggacaaggctgggcatgtagtgaataaa
tcgctttattgccccccctctttggaggggacggtgattggggtgaatatcctcaccaaa
aagggctatgaaaaagacgcgcgcgccattagtgcctatgaggaggaaaaggcggtgcta
gacatcgagcactacgatcggctcaccatgctcaatcgcgaggagctgttgcaaattagc
tccattttctccaaagaacccctagaggaggcgacgactttaaatgaggtcgaatacgct
aagggcgatcgcatccctaaagaggtggttttagaaattaaccgctttgcgctcaattcg
ctcgccaaaaaatacaaaaaagaggtccaagatcgctttgagcaaatcaaagccaacttc
ttagaacaaaagaaaatcttagggcaagagcacgaggaaaagctctcgatcttagaaaaa
gatgacatcttgcccaatggggtcatcaagcaggttaaaatctacatcgccaccaagcgc
aagctcaaggtgggggacaaaatggcagggcggcatggcaataagggcattgtctctaac
atcgtgcccattgcggatatgccctacaccgctgatggcgaaccagtcgatattgtgctc
aaccccttaggcgtgcccagccgcatgaatatcgggcagattttagaagtgcatttgggc
ttggtgggcaagcaattaggggatcaaatcagtacccttttagaacaacacaacaccgac
atgctcaaaaaattacgcgccaaaatgcttgagatcgcccatgtggtgaatgtggataac
catgacctagcccatatgctggaaaaatgcagcgatgaggtgcttttgggctatgcacgg
gattggagttctggggtgaagtttgcgatccctgtttttgagggcatctctggcgagcag
ttcatgaatctctttaagctggctcaaattgatttggatggcaaaaccgagctttatgat
gggcgcacgggcgaaaagatgaaagaacgggtgaatgtgggctatatgtacatgctcaaa
ttgcaccacttggtggatgaaaaggtgcatgccagaagcacgggcccctattctttagta
acccaccagcctgtgggcgggaaagccctttttggggggcaacgctttggggaaatggaa
gtttgggcactagaggcttacggggcagcccacacgcttaaagaaatgctcaccgtgaaa
tctgatgatattagagggcgtgagaatgcctataaagccatcgcacggggcgaacatgtg
ggcgagtctgaaatcccagagactttctatgtcctcaccaaagaattacaatctttgggg
ctggatgtcaatatctttaatgaagaagtggatgaatttggtgcgcctaagcccattgtg
atcaaagaggatgatcgccccaaagactttagctccttccagctgacactggctagccca
gagaagatcaaagagtggagctatggggaggtcaaaaagccagagaccatcaattaccgc
accctcaagcccgaacgagacgggctcttttgcatgaaaatctttggacccaccaaagat
tatgaatgtttatgtggcaaatacaaaaaaccccgttataaaacgatcggcacttgtgaa
aaatgcggggtcgccatcaccagctctaaggtgcgatctttccgcatggggcatattgag
ctagccacgcccgtagcgcacatttggtatgtgagctccttgcctagccgcattggcacg
ctactagggatcaagatgaaggacttagaacgcgtgctttactatgaagcctacattgtc
aaagaacccggcgaggctttttatgacaacgaatgcaccaagcccatttgcaaatacgat
attttaaacgaggagcaattccaaagcgtggcgcgcctcaatgaagacaagggttttgta
gcgcacatgggcggagaggtgatcaaggaccttttagaggagctagatttagtcgccttg
ctgaggagccttaaagaggaggtcaaggagaccaactcagatgctaagaaaaagaaactc
atcaaacggcttaaagtcgtggagagtttcttaaattcaggcaatcgccccgagtggatg
atgctaaccgccctgcccgtcttgcccccggatttgcgcccgcttgtggctttagatggg
ggcaagtttgcggtgagcgatgtcaatgagctttaccgccgtgtgattaaccgcaaccaa
cgcttaaaacggctcatggaactgggcgcacccgagatcatcgtgcgcaatgaaaaacgc
atgttgcaagaagccgtagatgccttgtttgataatggcagaaacgctaacgctgtcaaa
ggtgccaacaaacgccccttaaaatcgctctcagagatcatcaagggcaaacaagggcgt
ttccgccaaaacttactcggtaagcgggtggatttctccgggcgcagcgtgatcgtggtg
ggccccaacttgcgcatggatgaatgtgggttgcctaaaaacatggcactagagctcttc
aagccccatttactctccaaattagaagaaaaaggctttgcgaccacgctcaagcaagcc
aaacgcatgattgagcaaaaaagcaatgaggtttgggagtgcttggaggagatcgtgcag
ggttaccccgtgttgctcaaccgcgcccccactttgcacaaacaatccatccaagccttc
caccctaaattaatcgatggcaaggcgatccagttgcaccccctagtgtgttccgccttt
aacgccgactttgatggggatcaaatggcggtgcatgtgcccttaagccaagaggcgatc
accgagtgcaaggttttaatgttgagctcgatgaatattttattgcctgccagtggcaag
gcggtcgccgtgcccagccaagatatggtgttggggctttactacctctctttggaaaag
agtggggtattaggggagcataaactcttttccagcgtgcatgaggttttaatggctgtg
gatagcaaggtgcttgatttgcacgctaaggtgcgtgttttgcacgatcgccacatttta
cacaccaccgccgggcgtttggtgctcaaatccattttacccgactttgtgcccatacac
ctatggaataaaatgatgaccaaaaaggacattggggcattggtggattttgtgcataaa
gagagcgggattggagccagtgcgcgctttttggacaatcttaaaatgctgggctttcgc
tacgccactaaggcgggaatctctatctctatggaagatattatcacgcccaaaaacaaa
atccgcatggtcgaaagtgccaaagaaaaggtgcgtgccattcaggcgcaatttgagggt
gggcatttgaccacacaagaacgctataacaaaatcatcgacatctggaccgaggtcaat
gaccagatgagcaaagagatgatgcaagccatcgcacaagacaaagagggctttaactcg
atttatatgatggctaatagcggggctaggggttcagcggcacaaatacggcaactctca
gccatgcgggggttgatgacaaaacctgatgggacaatcattgaaacgcccattatctcc
aactttaaagagggcttgaatgtcctagaatattttaactccacgcacggggcgcgcaag
gggctagccgatacggcgttgaaaaccgccacagcgggctatctcacccgcaagctcatc
gatgtttcccaaaatgtcaaggtggttcaagaggattgcggcacgcatgagggaatcgag
atcaccgatataacggtgggtagcgaactcatcgaaccgctagaagaacgcatttttggg
cgcgttttggtggaggacatcatcgatccgctcacaaacgaggtcttgttaaatgccgat
acaatggtggatgaggaaaaggctaaaaagatcattgaagcaggaatcaagtccgtaacg
attcgcacgcccgtaacctgtaaggcgcaaaagggcgtgtgtgccaagtgctatggtctg
aatttgggcgagggcaagatggtcaaaccgggcgaggcggtgggggttgtggccgcccag
tctatcggcgagccgggcacacaattaaccctaaggactttccatgtgggcgggacagcc
tcaaggagccaagaggagcatgaaattatcgccaacaatgaaggctttgtgcgtttcttt
aatgttaaaacctaccaaaacaaggagggtaaaaatatcattgtcaatcgccgcaatgct
gcaattttggtggttgagcccaagatcaaagccccttttgctggcgtgttgaaaattgac
agcgcgcatctgaagaggtcgttttga
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integrated database retrieval system
