Helicobacter bilis: XJ32_02250
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Entry
XJ32_02250 CDS
T04788
Name
(GenBank) hypothetical protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hbl
Helicobacter bilis
Pathway
hbl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XJ32_02250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbl03019
]
XJ32_02250
03016 Transfer RNA biogenesis [BR:
hbl03016
]
XJ32_02250
Enzymes [BR:
hbl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
XJ32_02250
Messenger RNA biogenesis [BR:
hbl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XJ32_02250
Transfer RNA biogenesis [BR:
hbl03016
]
Prokaryotic type
tRNA degradation factors
XJ32_02250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_2nd
M64_N
Motif
Other DBs
NCBI-ProteinID:
AQQ59123
UniProt:
A0A1Q2LFE1
LinkDB
All DBs
Position
complement(493985..496261)
Genome browser
AA seq
758 aa
AA seq
DB search
MSIKNGTKEYAKKLALFHALSKTPIKTSKTIQSFLNECKNKLISTKGEYYFLPKDVKFMV
VTKLEKIPHTDTSYKLMLTEAFFSISYKRLQAQKDSIRTNPYIYYVALTSKKPLQIHDLL
LIRIKKDSKKYQEIPKHDYKKVMQLELHYKHGLNIIINKNLYYANNQHTSHIKQDSKKHK
TTESNAVTRHICMITERKKRIVAQALNTRMILPVKATQKALKALPKFTLIAVNENHEITE
VLGNLTQGSLDREIALYINDYTPKDFSQKALNEAENMAKSFMNTESIPLPKNHIKKQLDN
TCRYDLTHLPFCTIDPVNAKDHDDAIYYDSKHSILYVAIADVSSYVSLDSTLDKEARDRA
FSLYFPNKVFPMLPPQLSSHACSLKQDEKRLALVWALKLHKRNVKVLHSQIFKAVICSHA
SLNYKQVSHFLESRLDSKSCKNIESKPINNQAIEESLLAFSKLAVLLYKKRMQNGIDLAL
RDFSLQVDDDEKLDSITIDSKDISHTIVEEAMLLANQASAMYLHSIKHGIYRNHAEPNKR
DFYKLLNVLSNMNIGNKSIESKRNKKHNSMLTTLQSLQKEAIKKHKRHIVDFCIVRHFAK
ANYMSNSIGHFGLGFPFYTHFTSPIRRYSDLLVHRLITAHLQNNTKILQYIMRETKTILA
HINKREVQFDSIESYYKRLKMLRYAQDLVPFNDEALVFMVRKSVAYGFPLHKVGYCSVEI
DCKDCVINTHEVIQIQIIGVDFNTLSLKAEPIIQKNNT
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaataaaaaatggcacaaaagaatatgcaaagaaactcgcactttttcatgcttta
agcaaaacgcctattaagacaagcaaaactatacaatcatttttaaatgaatgtaaaaat
aaacttatatctacaaaaggtgaatattattttctaccaaaagatgtaaaatttatggta
gttacaaaactagagaaaatcccacatacagacacttcctataaactcatgctaacagaa
gccttttttagcatatcttataagagacttcaagcccaaaaagattctatacgaacaaat
ccttatatctattatgttgcactcacttcaaaaaagccattgcaaatacatgatttacta
cttattagaataaaaaaagattctaaaaaatatcaagagattccaaagcatgactataaa
aaagtcatgcagttagaattacactataaacatgggctaaacataataataaataagaat
ctatattatgcaaataatcaacacacaagccacataaaacaagattctaaaaaacataaa
acaacagaatctaatgcagtaacaagacatatttgcatgattacagaacgcaaaaaaaga
atagtagcacaagccctgaatacccgcatgatactacctgtaaaagccacacaaaaagcc
ctaaaagccctgccaaaatttacactcatagcagttaatgaaaatcatgagataacagaa
gttttagggaatctcacacaaggcagtttagatagagaaatagccctctatatcaacgac
tacacaccaaaagactttagccaaaaagccttgaatgaagcagaaaatatggcaaaaagc
tttatgaatacagaatctataccattgcctaaaaatcatataaaaaagcaactagataat
acatgtcgctatgatttgacacatttgcctttctgcacgattgaccctgtgaatgcaaaa
gatcatgatgacgcgatttattatgattctaaacatagcattttatatgtagcaatcgct
gatgtaagcagctatgtctctctagatagcactttagataaagaagcaagggatagggct
tttagtctgtattttccaaataaagtctttcccatgttgccaccacagctaagctctcat
gcttgttccttaaagcaagatgaaaagagactagcattagtttgggctttaaaactgcat
aaaagaaatgtaaaagtcctgcattctcaaatctttaaagcagtgatttgctcgcatgct
tcactcaattataagcaagtcagccattttttagaatctagactagattctaaatcttgc
aaaaatatagaatctaaacccataaataatcaagccattgaagagtctttacttgctttt
tcaaaacttgcagttttattatacaaaaagcgtatgcaaaatgggatcgatttagcgtta
agggatttttccttacaagtagatgatgatgaaaaactagattctataacaatagattct
aaagatatttctcacactattgtagaagaagcaatgctacttgcaaatcaagcaagtgca
atgtatctacacagcataaaacatggaatctatcgtaatcatgcagagccaaataaaagg
gatttctacaaacttttaaatgttttatcaaatatgaatataggcaataaaagcatagaa
tctaaacgcaataaaaaacacaatagtatgctaactaccctacaatctttacaaaaagag
gcgataaaaaagcataaaaggcatattgtagatttttgcattgtaaggcattttgctaaa
gcaaattatatgagtaatagtatcgggcattttggattaggattcccattttatacgcat
ttcacttcgcctattcgccgttatagcgatcttttagtccatcgcttaatcacagcacat
ttacaaaataacacaaaaatattacaatacattatgcgtgaaacaaagactatattagcc
catatcaacaagagagaagtgcaatttgattctatagaatcatattataaacgcttaaaa
atgcttcgctacgcacaagacttagtgccttttaatgatgaagccttagtctttatggtg
agaaagagtgtcgcctatggttttcctttgcataaagttggctattgtagtgttgagatt
gattgtaaggattgcgttataaacacacatgaagttatacagattcaaataattggtgtc
gattttaatactttaagcctcaaagcagagcctataatacaaaaaaataatacataa
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