Helicobacter bilis: XJ32_10460
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Entry
XJ32_10460 CDS
T04788
Name
(GenBank) single-stranded DNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hbl
Helicobacter bilis
Pathway
hbl03410
Base excision repair
hbl03430
Mismatch repair
hbl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hbl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
XJ32_10460
03430 Mismatch repair
XJ32_10460
03440 Homologous recombination
XJ32_10460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbl03400
]
XJ32_10460
DNA repair and recombination proteins [BR:
hbl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
XJ32_10460
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
XJ32_10460
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XJ32_10460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AQQ60439
UniProt:
A0A1Q2LJ72
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All DBs
Position
complement(2356198..2357949)
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AA seq
583 aa
AA seq
DB search
MPSDSAINTQHDFNAIKKGLQTFSHINEIESILKQRFKDFCFHTLKDIPHPKELHNNMEA
SLFVCQSILKNEKIVIVGDYDTDGICATSIMLDFFNELSYNNVAFAMPNRFIHGYGFSVK
LFHEILKDHSDVKVIITVDNGVSSFQAAELCREHNIGLIITDHHTLEVDSNKDQKIPYCN
FMINPQQAICNFPYSEICGSLVAWYFCCAIKISMLNLCSDSNTKNNQTKKLLNCYEKNLK
NIRMESFLLLVGIATIADVMPLNAINHTICKYALKHIPHSKRYAFQALMENLKSSIDSQV
LGFRIIPLLNAAGRISDGKIALSFLRSTSLSNARFYLKQLKDLNTQRKLLQDEVTNKAFQ
SISQIPQNENMLCAVGEDWHEGVLGIVAGKMADEFQKPCFVLTNTNGVCKGSGRSAGDVD
LISSMQKIGHLMQRYGGHVGAVGLELKDYNLESFIKSFKPISHNIEKKENVLGILNSHLI
NYELFSCITSFEPFGNGNPLPKFLCEMEILECKKTGQGFREFHFKRTENSSIKGMFFNQK
YADYNFTIGSILCFRATIALDSQSFYTTQNRQIMLIIDRVYTE
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgcctagtgattctgctataaacacgcagcatgactttaatgcgatcaaaaaaggctta
caaacctttagtcatattaatgagatagaatctattttaaaacaaagattcaaagacttt
tgctttcatacattaaaagatataccgcacccaaaagaacttcataataatatggaagca
agtctttttgtatgtcaaagcatattaaagaatgaaaagattgtaatcgttggagattat
gatactgatgggatttgtgcgacttctattatgcttgatttttttaatgagctttcatac
aataatgtagcctttgctatgcctaatcgctttatacatggctatggctttagtgtgaag
ctgtttcatgagattctaaaagaccatagcgatgtaaaagtgattataaccgttgataat
ggtgtgagtagctttcaagcagcagagctatgcagagagcataatataggattgataatc
acagatcatcatacacttgaagtagatagcaataaagaccaaaagattccatattgtaac
tttatgattaatccgcaacaagcaatatgtaacttcccttatagtgagatttgtggaagc
ttagtggcgtggtatttttgctgtgcgataaagattagtatgctaaatctttgtagtgat
tctaacactaagaataatcaaacaaaaaagcttttaaattgctatgaaaagaatctaaaa
aatataagaatggaatcttttctactgcttgtaggtatcgcaacaatcgctgatgtcatg
ccgctaaatgcgataaatcacacgatttgtaaatacgccttaaagcacattccacatagt
aagagatatgcctttcaagcccttatggagaatctaaaaagtagtattgactctcaagtg
ctaggctttagaatcattccgcttttaaatgcggcaggtaggattagcgatggtaaaatc
gccctatctttcctgcgctcaacttcattatcaaatgctagattctatctcaagcagtta
aaagacctaaacacacaaagaaaacttttacaagatgaggtaactaataaagcctttcaa
tccattagccaaatacctcaaaatgagaatatgctatgtgcggtgggtgaagactggcat
gaaggtgtgctagggattgtagcgggtaaaatggctgatgagtttcaaaagccctgcttt
gttttaacaaatacaaatggcgtatgtaagggcagtggtagaagtgctggtgatgtagat
ctcatctctagcatgcaaaaaataggacatttaatgcagcgatatgggggacatgtggga
gctgtggggctggaattaaaagattataatctagaatcttttataaaatctttcaagcca
atttctcataatatagagaaaaaagagaatgttttaggtatattaaactcacatttaatt
aattatgagcttttttcatgtatcacaagttttgagccttttggaaatgggaatccactg
ccaaaatttctctgtgaaatggagatacttgagtgtaagaaaaccgggcaaggctttcgt
gaatttcactttaaacggacagaaaatagcagtattaaaggcatgttttttaatcaaaag
tatgcagattataactttactatcggttctatattatgttttcgtgcaacaatagccctt
gattctcaaagcttttatactacgcaaaataggcaaatcatgcttataatcgatagagtt
tatacagaatag
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