Hymenobacter busanensis: GUY19_01470
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Entry
GUY19_01470 CDS
T07319
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hbn
Hymenobacter busanensis
Brite
KEGG Orthology (KO) [BR:
hbn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hbn03016
]
GUY19_01470
Enzymes [BR:
hbn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GUY19_01470
Transfer RNA biogenesis [BR:
hbn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GUY19_01470
Prokaryotic type
tRNA splicing ligases
GUY19_01470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QHJ06032
LinkDB
All DBs
Position
343900..345303
Genome browser
AA seq
467 aa
AA seq
DB search
MAQQLRGNDLRELGFPEGRAIGLALAQLQRKHLKRLSQTDQLALLKLILQTPTNFLTDLD
WSHTAAALLPPPNRHIELTARKDYVTFGSEYIEPGAVHQMETAMKLPVTVGGALMPDAHF
GYGLPIGGVLATDNAVIPYAVGVDIGCRMALSIFPLPPQYLAQRVQELKAVLLATTKFGN
RDVFRHGQKLGHAVLERDEFATIPFLRNKQETAAAQIGTSGGGNHFVEFGIVEILDPTNE
MGLPVGQYVGLLSHSGSRGLGASVANHYTKLAMDTCQLPAEAKHLAWLTLDSEGGQEYWA
AMNLAGDYASACHHQIHQRVAKALGERPLAKVENHHNFAWKERLADGREVIVHRKGATPA
GAGVLGVIPGSMTAPGFIVRGRGAAESLSSASHGAGRLMSRTRAKAELGEADVRRHLQAH
GVELIGGGLDEAPMTYKDIFAVMQSQQELVDVLGTFTPKIVRMEGGV
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggcacaacaactacgcggcaacgacttgcgggaactgggtttcccggaaggccgcgcc
attgggctggctttagcgcaattgcagcgcaagcacctgaagcgtctttcgcagacggac
cagctggccttgctcaaactgattctgcaaacccccaccaatttcctcaccgacctcgac
tggagccacaccgcggcggctttgctgcccccgcccaaccgccacatcgagctgacggca
cgcaaagactacgtcaccttcggcagcgagtacatcgagccgggcgcggtgcaccagatg
gaaacggccatgaaactgcccgttaccgtgggcggtgcgctcatgcccgacgcccacttc
ggctacggcctgcccatcggtggggtgctggctaccgacaacgccgtgattccctacgcc
gtgggtgtcgacatcgggtgccggatggccttgtccatcttcccgctaccgccccagtac
ctcgcccagcgcgtgcaggagctgaaagcggtgctgctagctaccaccaagttcggcaac
cgcgacgtgtttcggcacgggcagaagctgggtcacgcggtgctggagcgcgacgaattt
gccacgattcccttcctgcgcaacaagcaggaaacagcagcggcgcaaattggtacctcc
ggcggcggcaaccacttcgtggagttcggcatcgtcgaaatcctcgacccgaccaacgaa
atggggctgcccgtggggcagtacgtggggctgctctcgcactccggctcccgcggcctg
ggcgccagcgtggccaaccactacaccaagctcgccatggacacctgccagctgcccgcc
gaagccaagcacctcgcctggctgacgctcgactcggaaggcggccaggaatactgggcg
gccatgaacctggccggcgactacgcctcggcctgccaccaccagattcaccagcgcgta
gccaaagccctgggcgagcggcccctggcaaaagtggaaaaccaccacaacttcgcctgg
aaagaacgcctggccgacggccgcgaggtcatcgtgcaccgcaagggcgccacgccggcc
ggcgcgggcgtgctgggtgtcattcccggctcgatgacggcccccggcttcatcgtgcgc
gggcgcggcgcggctgagtcgttgtcgtcggcctcgcacggggcgggccgtttgatgtcg
cgcacccgtgccaaagccgagttgggcgaagccgacgtgcgccggcacctgcaggcgcac
ggcgtggagctcatcggcggcgggctggacgaagcgccgatgacctacaaggacatcttc
gccgtgatgcaaagccagcaagagctggtggacgtgctcggcaccttcacgccgaaaatc
gtgcgcatggaaggcggggtgtag
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