Halogeometricum borinquense: Hbor_00780
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Entry
Hbor_00780 CDS
T01359
Name
(GenBank) Transcription initiation factor IIB (TFIIB)
KO
K03124
transcription initiation factor TFIIB
Organism
hbo
Halogeometricum borinquense
Pathway
hbo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hbo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Hbor_00780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbo03021
]
Hbor_00780
Transcription machinery [BR:
hbo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
Hbor_00780
Prokaryotic type
Archaeal type
TFB
Hbor_00780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
RB_B
UNC45-central
Trm112p
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
ADQ65691
UniProt:
E4NRL5
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All DBs
Position
complement(70360..71250)
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AA seq
296 aa
AA seq
DB search
MSEARSPDDATLTTTCPECDGRLHAEGQETVCGDCGLVVSEYTIDHGPEWRSFADDDRNP
KRTGAPLTQSRHDRGLSTEIGRSTRVKGRKRRRLARMRKQHNRARISTKRERNQVYAFTE
IRRLTSALSLPERIRDHACSLFKSAQNEDLLRGRSLEGFAAACVYAACRVANVSRTVGEV
VAEAKATEAEQSAAYDALNRDLGLPVGPVDPVEYVPRFASRLDLSRDVERRAREYAAEAA
EQGLSVGRNPSGVAAGCLYTAARDLDVEVTQTEAADVADVTPVTLRKTYVALRDDE
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagcacgctcccccgacgacgcaacgctgacgaccacctgccccgagtgcgac
ggccgactgcacgctgagggccaagagacggtttgcggcgactgcggactcgtcgtctcg
gagtataccatcgaccacgggcccgaatggcggtcgttcgcggacgacgaccggaacccc
aaacgtacgggtgcgccgcttacccagtcgcgtcacgaccgcggcctttcgactgaaatc
ggtcgttcgacgcgtgtcaaaggccgaaaacgccgccgcctcgcccggatgcgcaaacag
cacaaccgcgcgcgaatctccaccaagcgcgagcggaatcaggtgtacgcgttcaccgag
attcgccgtctcacgagcgcgctgtcgctccccgaacgcatccgcgatcacgcgtgttcg
ctgttcaagtcggcgcagaacgaagaccttcttcgcggtcggtcgctcgaagggttcgcc
gccgcgtgcgtctacgccgcctgtcgcgtcgccaacgtctcccgaactgtcggtgaagtc
gtcgccgaggcgaaggcaaccgaagcggagcagtctgcggcgtacgacgcgctgaaccgc
gacctcggtctgcccgtcggacccgtggaccccgttgagtacgtcccgcgctttgctagc
cgcctcgacctctcgcgcgatgtggaacgccgcgcccgcgagtacgccgccgaagccgca
gagcagggtctctccgtcggccgcaatccgagcggtgtcgccgccggatgtctgtacacc
gccgcacgcgacctcgacgtcgaagtgacgcagaccgaggcggccgacgtggccgacgtg
acgcccgttaccctccggaagacgtacgtggcgctgcgtgacgacgagtga
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