Halogeometricum borinquense: Hbor_01100
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Entry
Hbor_01100 CDS
T01359
Name
(GenBank) 2''-5'' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
hbo
Halogeometricum borinquense
Brite
KEGG Orthology (KO) [BR:
hbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hbo03016
]
Hbor_01100
Enzymes [BR:
hbo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Hbor_01100
Transfer RNA biogenesis [BR:
hbo03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Hbor_01100
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Peptidase_S66
Motif
Other DBs
NCBI-ProteinID:
ADQ65721
UniProt:
E4NS36
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All DBs
Position
complement(94537..95100)
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AA seq
187 aa
AA seq
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MRLFVSIDLPDSLTESVEAAQERFADAEGLRFTDPSQAHVTMKFLGDTDEDRLEDIDEAL
EAAIAAADVDPYDATVGGFGVFPSIEYISVVWAGVRDDGGAAKTTTLAEAIERETVERGF
DPEDHSFTPHVTIARMDDARGKDHVQRVVREEDPDLGTFHVEEVRLKQSTLTNDGPRYET
VRRYPLD
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atgcgactgtttgtgagcatcgacttgcccgactcgctcaccgagtcagtcgaggcggcg
caggaacgcttcgctgatgccgagggccttcgctttaccgacccttcacaggcgcacgtg
acgatgaaattcctcggagacaccgacgaggaccgcctcgaagacatcgacgaggcgctg
gaggcggcgatagctgctgccgacgtagatccgtacgatgccaccgtcggcggattcggc
gtcttcccctccatcgagtatatcagcgtcgtctgggcgggcgtccgcgacgatggcggt
gcggcgaagacgaccaccctcgcggaggccatcgaacgcgagaccgtcgagcgtggattc
gatccggaagaccactcgttcacgccacacgtgactatcgcacgaatggacgacgcacgc
ggtaaagaccacgttcagcgtgtcgtccgcgaggaagacccggatctcgggacgtttcac
gtcgaggaagttcggctgaaacagagtacgctgacgaacgacggtccgcggtacgagacg
gtgcgccggtatccgctcgattga
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