Halogeometricum borinquense: Hbor_03050
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Entry
Hbor_03050 CDS
T01359
Name
(GenBank) tRNA intron endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
hbo
Halogeometricum borinquense
Brite
KEGG Orthology (KO) [BR:
hbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hbo03016
]
Hbor_03050
Enzymes [BR:
hbo01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
Hbor_03050
Transfer RNA biogenesis [BR:
hbo03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
Hbor_03050
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GFIT
Motif
Pfam:
tRNA_int_endo_N
tRNA_int_endo
tRNA_int_end_N2
Motif
Other DBs
NCBI-ProteinID:
ADQ65915
UniProt:
E4NTH0
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All DBs
Position
285961..287010
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AA seq
349 aa
AA seq
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MSSPGAFSNMDATLHDDVVRVGDDARQRFYDSRGYGRPLDGNRLELAPVEAAHLLSRGDL
DDIDGMEFREFLAETGAALAFVVYKDLRDRGFYLSPAREEWPGVSDADGIDFVVYPRGKG
PTDGDVEYRIRVIGERERVAAASLGDVVLAVVDEDGDLTYFDTDDDPDVGGTDDYIPPEG
LDADLLSDRVVCYESPDEVYENGFYGQRLFGRNAEEGPLQLSLIEGAYLARRGVIDVDDE
EVVALARDVEGDRFDRRLKTYAALRDAGSVPKSGFKFGADFRVYTDFETVSSLSHSADLV
RVVTPDHAFFPRDLSLDVRLAGGVRKRMVFALTDANDGIDWLSVARLTP
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcgccgggcgcgttctcgaacatggacgccacactgcacgacgacgtcgttcgg
gtcggggacgacgcgcgtcaacggttctacgattcgagaggctacggtcggccactcgac
gggaaccgactcgaactcgcgccggtcgaggcggcgcacttgctctctcggggagacctc
gacgacatcgacggtatggaattccgcgagttcctcgcggagaccggcgcggcgttggcc
ttcgtcgtctacaaagaccttcgggaccggggattctacctctctcccgcgcgcgaggag
tggccgggtgtttccgacgccgacggcatcgatttcgtcgtctacccgcgcggaaaggga
ccgacggacggcgacgtggagtaccgaatccgcgtcatcggcgaacgcgaacgcgtggcc
gctgcgtcgctcggggacgtcgttctcgccgtcgtggacgaggacggtgatctgacgtac
tttgacaccgacgatgacccggacgtgggtgggacggacgattacataccgccagaggga
ctcgatgcggaccttctctcggaccgcgtcgtctgctacgaatcgcccgacgaagtgtat
gaaaacggcttctacggccaacggctgttcgggcgcaacgccgaggaggggccgctgcaa
ctgtcgctcatcgagggcgcatatctcgctcgccggggtgttatcgacgttgacgacgag
gaggtcgtcgcgttggcccgcgacgtggagggcgaccggttcgaccgccgcctgaagacg
tacgcggccctcagagacgctggctccgtccccaagagcgggttcaagtttggtgctgac
ttccgcgtctacaccgatttcgagacggtgtcgtcgctgagtcactccgccgacctcgtt
cgcgtcgtcacaccggaccacgcgttcttcccccgtgacctttcgttggacgttcgactc
gctggcggggtccggaaacgaatggtttttgcgctcacagacgccaacgatggcatagac
tggctttcggtagcccgactcaccccatga
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