Halogeometricum borinquense: Hbor_08130
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Entry
Hbor_08130 CDS
T01359
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hbo
Halogeometricum borinquense
Pathway
hbo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Hbor_08130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbo03019
]
Hbor_08130
03009 Ribosome biogenesis [BR:
hbo03009
]
Hbor_08130
04131 Membrane trafficking [BR:
hbo04131
]
Hbor_08130
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hbo04147
]
Hbor_08130
Messenger RNA biogenesis [BR:
hbo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Hbor_08130
Ribosome biogenesis [BR:
hbo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Hbor_08130
Membrane trafficking [BR:
hbo04131
]
SNARE
SNARE associated proteins
Others
Hbor_08130
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Hbor_08130
Exosome [BR:
hbo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Hbor_08130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
AAA_16
RuvB_N
AAA_5
TIP49
AAA_22
AAA_33
AAA_2
AAA_14
nSTAND3
NPHP3_N
IstB_IS21
AAA_28
RNA_helicase
Mg_chelatase
AAA_7
Sigma54_activat
ABC_tran
AAA_18
AAA_17
DUF815
ATPase
NB-ARC
Parvo_NS1
AAA_3
SLFN-g3_helicase
AAA_24
Zeta_toxin
PhoH
AAA_30
TsaE
AAA_11
AAA_19
AAA_lid_PRS2_C
Vps4_C
ATP-synt_ab
NACHT
Zot
Motif
Other DBs
NCBI-ProteinID:
ADQ66410
UniProt:
E4NNX9
LinkDB
All DBs
Position
complement(753667..755892)
Genome browser
AA seq
741 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGGETTAAKVWRADRQDWN
TDTVRIDGFTRQNADVGIGERVTIRKAEATKAEKLVLAPPEEASVQFGSDAAGMVKRQIL
KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVETDPEGVCLVTEDTEVELREEPISGFE
KTGGGITYEDIGGLQGEIQRVREMVELPMKHPQIFKKLGIEPPQGVLLHGPPGTGKTLLA
KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKEESPSIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLETRGQVIVIAATNRVDSVDPALRRPGRFDREIEIGVPDES
GRKEILQIHTRGMPLSDDVSLDHLADETHGFVGADIESLTKEAAMKALRRYLPEIDLDEE
DIPPSLIDRMIVKRSDFEGALTEVEPSAMREVLVELPKVSWDDVGGLEDPKQKVKESVEW
PLTSRDKFERMGIEPPKGVLLYGPPGTGKTLIAKAVANETNANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVSPTIIFFDELDSLAPSRGNDMGNNVSERVVNQLLTELDGLEENGDV
MVIGATNRPDMIDPALIRSGRFDRLVLIGQPGEEGREQILRIHTQSSPLAPDVSLREIAE
ITEGYVGSDLESIAREAAIEALREDDDAKEIEMRHFRKAMEAVRPTITDELMDYYEQMQD
QFKGGARDQLTDRRDGRIGFQ
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagtgcaactcgaagtggcgaaggcgtacccgaacgattcgggtcgcggtatc
gcccgtcttgacccggacacgttgctccatctcaaactctcaccgggcgacatcattgag
atcgaaggtggtgagacgacggcagcgaaggtgtggcgtgccgaccgccaagactggaac
actgacacggttcgtatcgacggcttcacccgtcagaacgccgatgtaggaatcggcgaa
cgggtgaccatccggaaggcagaggcgacgaaggccgagaaactcgtcctcgcgccgccg
gaggaagcgagcgtccagttcggttccgacgccgccggaatggtcaaacgccagatactc
aagcgtccggtcgtcgagcgcgacatcgttcccgtgatgtcctcgacgaaccacccattc
atgcggtcgcccggacaggcgatcccgcttatcgctgtcgagacggatccggagggcgtc
tgtctcgtcaccgaagacaccgaggtggaactccgagaggaacccatctccgggttcgaa
aagacgggtggcggcataacgtacgaggacatcggcggcctgcaaggcgagatccagcgg
gtccgggagatggtcgaactcccgatgaagcacccgcagatattcaagaaattgggtatc
gaaccgccgcaaggggtgctgttacacgggccgcccggcacggggaagacgctcttggcg
aaagcagtcgccaacgagacgtcagcgagtttcttctccatcgccgggccggagattatc
tcgaaatactacggcgagtccgaacagcaactccgcgagatattcgaggacgcaaaagag
gagtcgccgtcgatcatcttcatcgacgaactggactccatcgcgcccaagcgtgaggac
gtgaccggcgaagtcgaacgccgcgtcgtcgcccaactcctgacgatgatggacgggttg
gagacgcgcgggcaggtcatcgtcatcgcggcgaccaaccgtgtcgattcggttgacccc
gcgcttcgccgtcccggtcgattcgaccgcgaaatcgaaatcggtgtgcccgacgaatcc
ggccggaaggagattctgcagattcacacccgcgggatgccgctttcggacgacgtgtcg
ctggatcatctcgcagacgagacgcacggcttcgtcggtgcagacatcgaatcgctgacg
aaggaagccgcgatgaaggcgctccggcggtacctccccgaaatcgacttagacgaggag
gacatcccgccgagcctcatcgaccggatgatcgtcaagcgcagcgacttcgagggcgcg
ctcaccgaggtagaaccctcggcgatgcgggaagtcctcgtcgaactgccgaaagtgtcg
tgggacgatgtcggcggactcgaagaccccaaacagaaggtcaaagagagcgtcgagtgg
ccgctcacgtcgcgcgataagttcgagcggatgggtatcgaaccgccgaagggcgtcctc
ctgtacgggccgcccggcacggggaagacgctcatcgccaaagctgtcgctaacgagacg
aacgccaacttcatctcggttcgtgggccgcagttgctctcgaagtgggtcggcgagtcg
gagaaggcgattcggcagacgttccgcaaggcgcggcaggtcagtccgaccatcatcttc
ttcgacgagttggacagcctcgcacccagtcggggcaacgacatgggcaacaacgtctcc
gaacgcgtcgtcaaccaactcctaactgagttggacggcctcgaagagaacggcgacgtg
atggtcatcggcgcgaccaaccgtccggacatgatcgacccggcgctcatccgctcggga
cggttcgaccgtctcgtcctcatcggccaacccggcgaggagggccgcgagcagatcctg
cggattcacacgcagtcgagtccgctcgcccccgacgtgagcctgcgtgagatcgcggag
attaccgagggctacgtcggttccgacctcgaatccatcgcgcgtgaggccgctatcgag
gcgcttcgtgaggatgacgacgcaaaagagatcgaaatgcgtcacttccgcaaagcgatg
gaagccgtccgtccgacgatcacggacgaactgatggactactacgaacagatgcaagat
cagttcaaaggcggcgcacgcgatcaactcaccgaccggcgcgacggtcggatcgggttc
caatag
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