Halogeometricum borinquense: Hbor_11550
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Entry
Hbor_11550 CDS
T01359
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hbo
Halogeometricum borinquense
Pathway
hbo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hbo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Hbor_11550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbo03019
]
Hbor_11550
03009 Ribosome biogenesis [BR:
hbo03009
]
Hbor_11550
04131 Membrane trafficking [BR:
hbo04131
]
Hbor_11550
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hbo04147
]
Hbor_11550
Messenger RNA biogenesis [BR:
hbo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Hbor_11550
Ribosome biogenesis [BR:
hbo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Hbor_11550
Membrane trafficking [BR:
hbo04131
]
SNARE
SNARE associated proteins
Others
Hbor_11550
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Hbor_11550
Exosome [BR:
hbo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Hbor_11550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
CDC48_2
AAA_2
AAA_5
AAA_14
AAA_22
TIP49
NPHP3_N
nSTAND3
AAA_33
AAA_28
RNA_helicase
AAA_7
AAA_lid_PRS2_C
IstB_IS21
AAA_3
DUF815
Mg_chelatase
NB-ARC
ABC_tran
AAA_18
TsaE
Sigma54_activat
Parvo_NS1
SLFN-g3_helicase
AAA_24
AAA_17
AAA_25
AAA_30
AAA_11
ATPase
AAA_19
PhoH
ATPase_2
bpMoxR
Zeta_toxin
Bac_DnaA
Vps4_C
ATP-synt_ab
Molydop_binding
Motif
Other DBs
NCBI-ProteinID:
ADQ66745
UniProt:
E4NQQ7
LinkDB
All DBs
Position
complement(1073264..1075528)
Genome browser
AA seq
754 aa
AA seq
DB search
MKLIVKPLKQKDAGRGLAAIDRAAAEELGLEGGDYIRIEGDGGTAIARVWPGYPEDRGSG
VVRIDGRLRQQANVGIDDRVQVEPADVKPAKTVSIALPQNLRIGGNVGTYIRDKLSGQPV
TKGQSIQLPLGFGFMASSNQSVPVKIASTQPDGTVVITDSTEVQISQKPAEEIHGAEGRD
TSEGPSVTYEDIGGLDRELEQVREMIELPMRHPELFKRLGIDPPKGVLLHGPPGTGKTLI
AKAVANEIDASFHTISGPEIMSKYYGESEEQLREIFEDAEENAPAIVFIDEIDSIAPKRG
EAGGDVERRVVAQLLSLMDGLDERGEVVVIGATNRVDAIDPALRRGGRFDREIEIGVPDK
EGRKEILQVHTRNMPTAEGVDLDEYAEITHGFVGADIESLAKESAMNALRRIRPQLDLDE
DEIDTDVLESLEVREDDFKDAMKGIEPSALREVFVEVPDVTWENVGGLENTKERLRETIQ
WPLEYPEVYEKMDMQSAKGVLLYGPPGTGKTLLAKAVANEADSNFISVKGPELLNKYVGE
SEKGVREIFKKARENAPTVVFFDEIDSIAIERGQSSGDSGVSERVVSQLLTELDGLESLE
DVVVIATSNRPDLIDSALLRPGRLDRHIHVPVPDEEARHAIFEVHTEHKPLADDVDLDQL
ARKTEGYVGADIEAVCREASMAASREFINSVEPEEVEESIGNVRVTMDHFEAALDEVNPS
VTQETRRRYEEIEERFQKSDVERDPEEKVGRTFQ
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcattgtcaaaccactgaagcagaaagacgctggtcgtggacttgcggcgatt
gatcgcgctgccgccgaagaactcggtctcgaaggcggcgattatatccgcatcgagggt
gacggcggcaccgccatcgctcgtgtgtggcccggttaccccgaggaccgcggcagtggc
gtcgttcgtatcgacggccgacttcgccaacaggcgaacgtcggcatcgacgaccgcgta
caggtcgaacccgcggacgtaaagcccgcaaaaaccgtctctatcgccctgccgcagaac
ctccgtatcggcggcaacgtcgggacgtacatccgcgacaagctctccggacagcccgtc
acgaaggggcagagcatccaacttccccttggattcggattcatggcctcctcgaaccag
tcggtgccggttaaaatcgcctccacgcaaccggacggcaccgtcgttatcaccgactcc
acggaggtccagataagccagaaacccgcagaggagattcacggcgctgagggtcgtgac
accagtgagggcccgtcggtaacctacgaggacatcggcggcctcgacagagaactcgaa
caggtccgggagatgatcgaacttccgatgcggcacccggaactgttcaagcgcctcggc
atcgacccgccgaaaggcgtgctcctgcacggtccgccgggcaccgggaagacgctcatc
gccaaggccgtcgccaacgagatagacgcgtccttccacacgatctccggtccggagatc
atgtcgaagtactacggcgagtccgaagagcaactccgcgagatattcgaagatgccgaa
gagaacgcgccggccatcgtcttcatcgacgagatcgactccatcgcacccaagcgcggt
gaggctggcggtgacgtggaacggcgcgtcgttgcccaactcctctcgctgatggacggg
ctagacgaacgcggagaagtcgtcgtgatcggcgcgacgaaccgcgtcgacgccatcgac
ccggcgcttcggcgcggaggccggttcgaccgcgaaatcgagatcggcgtccccgacaag
gagggccgtaaagagattctacaggtccacacgcggaacatgccgaccgccgagggcgta
gacctcgacgagtacgcggagattacgcacgggttcgtcggcgcggacatcgagagcctc
gccaaggaatccgcgatgaacgctctacggcgtatccgcccgcagttggacctcgacgag
gacgagatcgataccgacgtcctggagtcgctagaggtccgcgaggacgacttcaaggac
gcgatgaagggtatcgaaccctccgcgctccgcgaagtgttcgtcgaagttcccgacgtg
acgtgggagaacgtcggtggcctcgaaaacaccaaagagcgcctccgcgagaccatccag
tggccgctggagtaccccgaggtgtacgagaagatggacatgcagtcggcgaagggtgtc
ctgctctacgggccgccggggacggggaagacccttctggcgaaggctgtcgccaacgag
gccgattccaacttcatctccgtgaaggggccagaactgctcaacaagtacgtcggcgag
tccgagaagggtgtccgtgagatattcaaaaaggcgcgcgagaacgccccgaccgtggtg
ttcttcgacgagattgactctatcgccatcgagcgcggccaaagctccggtgattcgggc
gtctccgaacgcgtcgtctcgcaactcctgaccgaactcgacgggctggagtcgctcgaa
gacgtggtcgtcatcgccacctccaaccggccggatctcatcgattcggcgcttctgcgt
ccggggcgactcgacaggcacatccacgtgcctgttcccgatgaggaggcacggcacgcc
atcttcgaggtacacaccgagcacaaaccgctggcagacgacgttgatctcgaccaactc
gcccgcaagaccgagggctacgtcggggccgacatcgaagcggtctgccgcgaggcatcg
atggctgcgagtcgggagttcatcaacagcgtggaacccgaagaagtcgaagagtccatc
ggcaacgtccgcgtcaccatggatcatttcgaggcggcactcgacgaagtcaacccgagc
gtcacccaagagacgcgccgtcggtacgaggaaatcgaagagcggttccagaagagcgac
gtcgaacgcgatcctgaggaaaaagtcggccggacgttccagtaa
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