Halogeometricum borinquense: Hbor_13010
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Entry
Hbor_13010 CDS
T01359
Name
(GenBank) ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hbo
Halogeometricum borinquense
Pathway
hbo03420
Nucleotide excision repair
hbo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hbo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Hbor_13010
03430 Mismatch repair
Hbor_13010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbo03400
]
Hbor_13010
Enzymes [BR:
hbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hbor_13010
DNA repair and recombination proteins [BR:
hbo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Hbor_13010
MMR (mismatch excision repair)
Other MMR factors
Hbor_13010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Gelsolin
DUF2800
Motif
Other DBs
NCBI-ProteinID:
ADQ66884
UniProt:
E4NRU7
LinkDB
All DBs
Position
complement(1198980..1202438)
Genome browser
AA seq
1152 aa
AA seq
DB search
MSGDSDEYPLWYPVPEEDVSPEPQQETIIDSDAYPMRVLAGAGTGKTFTMVRKVEHLIDE
EDVSPDRILTLTFTNNAAGSMREKLNAKLGTAGYDIDAYTYHSICNEILTDYAYEAGIDP
DFEVATDAEKYAIVLDVLDDIEYRSVKPNVYGSDGYASGAASKLLNFIGSMKRSGITPDD
IDAFLGPADRVYELADLSERVEAIASDHLGGRSVSSVLDSLPDVRADLVEERDVLGMDGM
EASVRDFLDRLVDLCDALEAAFEAHEAGDRDLPDNAYKLPKYLLGGYANGAPKGIPGDLD
LELTDHLDSFLSDCLTARDLTAGYAAYERELDERNLIDFDGLVVEAAELMESPVGEEIAA
RWDYVFCDEFQDTDRLQFDLVKSLVTDDNLFVVGDDDQAIYEWRGAHVANITDELDRAFA
ALSDEPLEENFRSRQPILDLANEAIQKLDHRERHKTLKRVDEPEYDGDTIATVELSDEDD
ADGASQLRTVVQNLLSGAAESFDEAYDPGDIALLVRKNDHATPVIEEFEDAGIPYQVAGD
LATESVGVGTVTAYLKALARPEDEVSWNRVLLMRYRLCDTDLRKLNAGDDPLVDTLRETP
LDEFEEPDRVAEARKHVTELLAIRDSASLSHLYRELTDVTNIEWYLSEQERRDLAQLEDV
IEQYGDSAVQPPLTPEFIDSLEHYDSLFDESGSSPTSQPDVADDAVNVMTIHKSKGLDFP
VVLIPQVTAGEWAPSSRTYDALETSLSDGAEAAFAEDFVERDARETRRVFHVGITRAEDV
LVLQGGSEDDDATDVHPVSESVDEILPSRIPWQPERGQLPLWADVQDCLPREAVDWTDTL
ATETVGHVGGTVNHAGEELAVAAARDRVLDLATATLNGELSPRAERETLQVASLTDPSTP
SPSLSHSYTSLAAYEECPRSHYLDYVVNAFPDYQETTVRSDSGGGVSQREIGLLFHDTAE
QAAKQGVKRRGDWYEICERLASHRRAEDALTAAKECIDRYFELELPNCEIIDAEREFELD
IDGHELVGYIDAVYRTPDDGLLVIDYKATERHRDLEDDKQLPIYLLACCDLYDEPVTRAG
YAYVGEIGPKVETRTFSDADLEAVTDDVTESMTRISEFSFNRYSADEHCQWCQHNQLPCA
PDSFSVGPRSEE
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgagcggtgacagtgacgagtacccgttgtggtacccggttccggaggaagatgtgtca
ccggagccccagcaagaaacgatcatcgactcggacgcatacccaatgcgggtgctcgcc
ggggctgggacgggaaagacgttcacgatggtacggaaggtggagcacctcatcgacgag
gaggacgtatccccggatcggattctcacgttgacgttcacgaacaacgctgcaggctcg
atgcgggagaagctcaacgcgaaactcggtacggcagggtacgacatcgacgcgtacacg
taccactcgatctgtaacgagatcctcaccgattacgcgtacgaagccgggatcgaccca
gacttcgaggtcgctacggacgccgaaaagtacgccatcgtgttggatgtcctggacgac
atcgagtaccggtctgtgaaacccaacgtgtacggctctgatgggtacgcgtcaggggcc
gcatcgaagttgctcaacttcatcggatcgatgaaacgcagcggcatcacgcccgacgat
atcgacgcgttcctcggtcctgctgaccgtgtctacgaactcgccgacctctcggagcgc
gtcgaggcgattgccagtgaccatctgggcggccggtccgtgtcgagcgtgctggactcg
ctcccagacgtccgtgctgacctcgttgaagaacgtgatgtgttggggatggacggaatg
gaggccagtgtacgcgatttcctcgaccgcttggtggatctttgcgatgcgctagaagcg
gcgtttgaagcccacgaggcgggcgaccgggacctgccggacaacgcgtacaagctcccg
aagtatctactcggtgggtacgcgaacggtgcgccgaaaggaatccctggtgaccttgat
cttgagctcacggatcatctcgactcgttcctctcggactgtctgacggcccgtgacctg
acggccggatacgccgcgtacgagcgggaactcgatgagcggaatctcatcgacttcgac
ggtctagttgtagaggcggccgagctgatggagtcgccggtcggggaggaaatcgctgct
cggtgggactacgtgttctgtgacgagtttcaggacaccgaccgcctgcagttcgacctc
gtcaagtcactcgtcactgacgacaacctgttcgtcgtgggtgacgacgatcaggcgatc
tacgagtggcgcggcgcgcacgtcgccaacatcactgatgaactcgaccgcgcattcgcg
gcactctccgacgaacccttagaggagaatttccgctctcggcagccgatcctggacttg
gcgaacgaggcgattcagaaactcgatcaccgggaacgtcacaagacactgaagcgcgtc
gacgaacccgagtacgatggggacaccatcgctaccgtcgagctgtcggatgaggacgat
gcggacggtgcttctcagcttcgtaccgtcgtgcagaacttgctgagcggggcagcagag
agtttcgatgaggcgtacgacccgggcgacatcgcgttactcgtccggaaaaacgaccac
gcgacaccagtcatcgaggaattcgaagacgctggcatcccgtaccaggttgcaggggat
ctggccacggaatccgttggtgtcggcaccgtgaccgcctacctaaaggcactcgcacgc
cccgaagacgaggtgagctggaatcgcgtcctcctgatgcggtaccggctctgcgataca
gacctccgcaagctcaacgcgggcgatgacccgctcgtggacacgctccgcgagacgcca
ctcgacgagttcgaggagccagaccgcgtcgcggaggcccgtaaacacgtcacggaactc
ctcgctatccgagattcagcgtcgctcagtcatctgtaccgcgagctcacagacgtcacg
aatatcgagtggtatctcagcgagcaggaacgtcgggatctcgcccagctggaggatgtc
atcgaacagtacggagacagcgctgttcaaccaccgctcaccccggagttcatcgactcg
ctcgaacactacgactctctgttcgacgagagcggctcgtccccgacgagtcagccggat
gtcgccgacgacgcggtcaacgtgatgactatccacaagagcaagggccttgacttccca
gtcgtcctcatcccgcaagtcacagcgggcgagtgggcaccgagttcacgcacctacgac
gcgctcgaaaccagcctttcagacggcgcagaggcggcgtttgccgaggacttcgtcgag
cgtgacgcccgtgaaacccgtcgcgtgttccacgtcggcatcacgcgcgccgaagatgtc
ctcgtcctccagggcggcagcgaagacgacgatgctacggacgtacaccccgtttcagaa
tccgttgacgaaattctcccgtcccgaatcccatggcaaccggagcgaggacagctcccc
ctctgggccgacgttcaagactgtctcccgagagaggcggtagactggacggacacactg
gccaccgagacagtcgggcacgttggcgggaccgtcaatcacgccggggaagaactcgca
gtcgcggcggcgcgcgaccgcgtgctagaccttgcaacagccaccctcaacggagagctc
tccccgagagctgagcgggagacactccaggttgcgtcgctgaccgacccgtcgacaccg
tcaccatcgctttcgcacagctacacgtcactggctgcctacgaagaatgcccacggagt
cactacctggactacgtggtcaacgcattccccgactatcaggagaccacagtcagaagc
gattccgggggcggtgtatcacaacgtgaaatcggattgctgttccacgacaccgcagaa
caagccgcgaagcaaggcgtgaaacgccgtggggactggtacgagatctgcgagcgtctc
gccagtcaccgccgcgctgaagatgcactcacggcggcgaaggagtgcatcgaccggtac
ttcgagttagagctccccaattgcgagatcatcgacgcggagcgggagttcgaactcgat
attgatgggcacgaactcgtcggctatattgacgcagtctaccggacgccggacgatggg
ctcctcgtcatcgactacaaggccaccgagcgccaccgagacctggaggacgataagcaa
ctcccgatctatctgttggcgtgctgtgacctgtacgacgagccagtgacgcgcgctggg
tacgcgtacgttggcgaaatcgggccgaaagtcgaaacgcggacgttcagcgatgctgac
ctagaagcagtcacggacgacgtgacggagtccatgacccgtatttcggaattctcgttc
aaccggtacagcgctgacgagcattgccagtggtgtcaacacaaccaactgccctgtgca
ccggactccttcagcgttggtcctaggtcagaagaatag
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