Halogeometricum borinquense: Hbor_14720
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Entry
Hbor_14720 CDS
T01359
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
hbo
Halogeometricum borinquense
Pathway
hbo03022
Basal transcription factors
hbo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hbo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Hbor_14720
09124 Replication and repair
03420 Nucleotide excision repair
Hbor_14720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbo03021
]
Hbor_14720
03400 DNA repair and recombination proteins [BR:
hbo03400
]
Hbor_14720
Enzymes [BR:
hbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hbor_14720
Transcription machinery [BR:
hbo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Hbor_14720
DNA repair and recombination proteins [BR:
hbo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Hbor_14720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
ResIII
Helicase_C
SNF2-rel_dom
DEAD
MarR_2
AAA_22
TrmB
MarR
AAA_25
AAA_30
Fe_dep_repress
HTH_24
AAA
RPAP1_N
SLFN-g3_helicase
DUF4283
Motif
Other DBs
NCBI-ProteinID:
ADQ67047
UniProt:
E4NTJ5
LinkDB
All DBs
Position
1385264..1387195
Genome browser
AA seq
643 aa
AA seq
DB search
MTEDDAGDTDGPSDTLSSESDELTSEPDAVGQTDIPANVAVENLSLSDFYDALEAEGRPV
MTAQQTGRRLGLSQAAASEALDRLARDGTLQRVEVETDPVVYYPAEWDRLADRERIVLFP
ERREIVVDQPTQYTRARLAQFAHLVDSTGDRNAGTRGYLYKIRQEDVWQAPFDDLDALLS
MMRSVLPRRSPHLETWVENQWKRANQFRLYTHEDDYVVLEAASESLMGNVARQKLDEEHL
VAPISDTESWVRDGKEAHIKRILYEAGYPIQDDRDLETGAALDVELRAELREYQQDWTDR
FTEQKSGVLVGPPGAGKTVTGIGILAAVGGETLVLVPSRELAAQWREEILRHTSLSEDQI
GEYHGGQKQVRPVTIATYQTAGMDRHRSLFDDREWGLIVYDEVHHVPSRIYRRSADLQAK
HRLGLSATPIREDDKEKEIFTLIGPPIGTDWSKLFEAGYVQEPEVEIRYVPWADDTARNE
WSSADGRERRQLASMNPQKIAETRRLLRQHPKSKALVFVDYLDQGEELAEALDVPFISGE
MRHHHRERLFRQFREGELRTLVISRVGDEGIDLPNAELAIVASGLGGSRRQGAQRAGRTM
RPAGGALVYVLATRGTSEEDFAQRQMRHLAEKGVRVTESDLTT
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgacggaagacgacgcgggagacacggacggtccgtccgacactctatcctccgagtcg
gacgaactgacttcggagccggacgccgttgggcagacagatattccggcgaacgtcgcc
gtcgaaaatctctcgctttccgacttctacgatgcgctcgaagccgaggggcgcccggtg
atgaccgcacagcagacgggtcggcgactcggtctctcccaggcggcggcctcggaagcg
ctcgatagacttgcccgcgacgggacactccagcgcgtcgaggtcgaaacggatccagtc
gtctactatccggccgagtgggaccgcctcgccgaccgcgaacgaatcgttctcttcccc
gaacgccgcgaaatcgtcgttgatcaaccgacgcagtacactcgcgcgcgcctcgcgcag
ttcgcccacctcgtagactctacgggtgaccggaacgcgggaacgcggggctacctctac
aagatccggcaggaggacgtgtggcaggcaccgttcgacgatctcgacgctctcttgtcg
atgatgcggtcggttctcccgcgccggtcgccgcatctggagacgtgggttgagaaccag
tggaagcgcgccaatcagttccgactctacacccacgaggacgattacgtcgtcctcgaa
gccgcttccgagagtctgatggggaacgtcgcccggcagaaactggacgaagaacatctc
gttgcgcctatctccgacacggagagttgggtccgcgacggcaaggaagcgcacatcaag
cgaatcctctacgaggccgggtacccaatacaagacgaccgcgacctcgaaaccggtgcg
gccttagatgtcgaactccgcgctgagcttcgggagtatcaacaggactggacagatcgg
ttcacagagcagaagtcgggtgttcttgtcggcccgccgggagcggggaagaccgtcacc
gggatcggaatcctcgcggccgtcggcggcgaaacgctcgtgctcgtcccgtcgcgcgaa
cttgccgcgcagtggcgcgaggagattctacggcacacgtctctctccgaagaccagatc
ggcgaataccacggcggacaaaaacaggtccggccggtcaccatcgccacttaccaaacg
gccgggatggaccgccaccggtcgctgttcgacgaccgcgaatgggggcttatcgtctac
gacgaggtacatcacgtcccctctcgcatctaccggcggagcgccgacctacaggcgaag
catcgactcggcctctctgcgacgccaatccgcgaggacgacaaagaaaaggagattttc
acgctcatcggcccgcccatcggtaccgactggtcgaaactgttcgaggccggctacgtg
caggaacccgaagtggagattcggtacgtcccgtgggccgacgacaccgcccgcaacgaa
tggtcgagcgcagacggccgtgagcgccgccaactcgcctcgatgaatccgcagaagatt
gccgagacgcgccgactcctccggcaacatccgaaatcgaaagcgctcgtgttcgtggac
tatctagaccaaggcgaggaactcgccgaggcgctcgacgtaccgttcatcagcggcgag
atgcgccaccatcaccgcgagcgtctcttccgccagttccgcgaaggcgagttgcggacg
ctcgttatttcgcgtgtcggcgacgagggaatcgacttgccgaacgccgaactcgccatc
gttgcctccggtctcggcgggtcgcgccgacagggagcccaacgcgccgggcggacgatg
cgccccgcgggcggcgcactcgtctacgtcctcgctacccgcggcaccagcgaggaggac
ttcgcacaacggcagatgcgccatctcgcggagaaaggcgtccgtgtcaccgaaagcgac
ctgacgacctga
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