Halogeometricum borinquense: Hbor_17550
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Entry
Hbor_17550 CDS
T01359
Name
(GenBank) Transcription initiation factor IIB (TFIIB)
KO
K03124
transcription initiation factor TFIIB
Organism
hbo
Halogeometricum borinquense
Pathway
hbo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hbo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Hbor_17550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbo03021
]
Hbor_17550
Transcription machinery [BR:
hbo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
Hbor_17550
Prokaryotic type
Archaeal type
TFB
Hbor_17550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Trm112p
Zn_ribbon_LysW
Ribosomal_S27e
HVO_0758
A2L_zn_ribbon
Sigma70_r4
Zn_ribbon_PaaD
Zn_Ribbon_YjdM
Cyclin_C
DUF5817
Motif
Other DBs
NCBI-ProteinID:
ADQ67323
UniProt:
E4NMB8
LinkDB
All DBs
Position
complement(1686348..1687301)
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AA seq
317 aa
AA seq
DB search
MERPSRQRQREQEVEQDSDERIACPECESTNIITDADQGELVCDDCGLVLDERQIDRGPE
WRAFNHSERQSKSRVGAPITETMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQE
RIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATS
ALYAACRQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELKPVDPKQFVPRFASAL
GLSEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTE
VTIRNRYQEQIEAMGFR
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggaacgtccgagccgccagcgtcagcgagagcaggaagtggagcaggattccgacgaa
cgcatcgcgtgcccggagtgtgagtccaccaatatcatcacggacgccgaccaaggcgaa
ttggtttgtgatgactgcggcttggtcttagacgagcgccagatagaccgcggtccagag
tggcgtgcgttcaaccactctgaacggcagtcgaagtcccgcgtcggcgcaccgatcacc
gagacgatgcacgaccgcggtctgacgacgacaatcgactggaaggacaaagacgcctac
ggtcgttcgctttcctctgagaaacgttcgcagatgcaccgcctccgcaagtggcaagag
cgcatccgaacgaaggacgccggcgagcgtaacctccagtttgcgctctccgaaatcgac
cgcatggcctctgcgctcggtgtcccgcgctccgtccgcgaggtcgcatcggtcatctac
cgccgtgcgctcaacgaagacctcatccgcggtcggtctatcgagggtgtcgccacatcc
gcgctctatgccgcctgccgacaggaaggaatcccgcgctcactcgacgaagtcgctgaa
gtctctcgcgtcccgcagaaggaaatcggtcggacgtaccgctatatctcccaagaactt
ggtctcgaactgaagcccgtcgatcccaagcagttcgtcccgcgctttgcctcggccctc
ggcctctccgaggaggtacaggcgaaagcaaccgaaatcatcgacgtgtccgcagaacaa
ggccttctatccggcaagtcgcccaccggctttgcggccgccgctatctacgctgcctcg
ctcctctgcaacgagaagaagacccagcgcgaagtcgccgacgtggcgcaggtgacggaa
gtcaccatccggaaccgctaccaagaacagatcgaagcgatgggcttccgctag
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