Halogeometricum borinquense: Hbor_25370
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Entry
Hbor_25370 CDS
T01359
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hbo
Halogeometricum borinquense
Brite
KEGG Orthology (KO) [BR:
hbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hbo03032
]
Hbor_25370
03400 DNA repair and recombination proteins [BR:
hbo03400
]
Hbor_25370
Enzymes [BR:
hbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Hbor_25370
DNA replication proteins [BR:
hbo03032
]
Prokaryotic type
DNA Topoisomerases
Hbor_25370
DNA repair and recombination proteins [BR:
hbo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Hbor_25370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
HHH_5
HHH
DNA_pol_lambd_f
Cdd1
DUF4332
DUF7559
IMS_HHH
HHH_8
Toprim_4
Toprim_2
SAM_BAF
Motif
Other DBs
NCBI-ProteinID:
ADQ68091
UniProt:
E4NSJ8
LinkDB
All DBs
Position
2426884..2429436
Genome browser
AA seq
850 aa
AA seq
DB search
MSKGPELIITEKDNAARRIADILSGESAEADRINGVNVYKWGGKRCIGLSGHVVGVDFPP
EYNDWRDVEPVELIDAPIDKHPTQENIVAALRRLARNARRVVIATDYDREGELIGKEAYE
LVRDVNEDVPVDRVRFSSITDREVTEAFDNPDGLDFNLAAAGEARQIVDLVWGAALTRFL
SLSARQLGDDFISVGRVQGPTLKLIVDREREIEAFDPEDYWELFADLQKDSESFEAQYFY
LDEDGNEAERVWDGDDAEEAYETLRNVEAATVDSVRRRTRTDDPPAPFNTTQFIRAAGSL
GYSAQRAMSIAEDLYTAGYITYPRTDNTVYPEDLDPRELLDAFTANRTFGDDAQNLLEQE
EIEPTAGDNETTDHPPIHPTGELPSRSDLTEDEWDVYELVVRRFFATVAESAKWEHLRVV
ADAGGLSLKANGKRLVKAGYHEVYPYFNSSESFVPDVAEGESLAVTDTEIEEKQTQPPRR
YGQSRLIETMEKMGIGTKATRHDVIQKLYDRNYIESDPPRPTRLARAVVEASEEFAELIV
SEEMTAQLEADMQAIARGDASLDDVTAESREILEDVFEGLMESGDEVGKHLQKSLKADKT
VGACPESDHDLVVRKSRRGSYFIGCDGYPDCTYTLPLPSTGKPLIMDEECDEHGLSHVKM
LAGRKTFVHGCPLCKAEEADAEEDLIIGDCPECGAGAESETPQNGDGETDGEHGELAIKR
LRSGSRLVGCTRYPDCDYSLPLPRRGDIEVTDEECEEHDLPEIRITYDDSDREPWDLGCP
ICNYRAYQAEQAGGDELQSVKGIGEKTAEKLKAAGIEDVPSLKEAEPDALADLVDGVGPD
TVRKWQSAAD
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagggccccgaactcatcatcacggagaaggacaacgccgctcggcgtatcgct
gacatcctgagcggcgagtccgcggaggccgatcggatcaacggcgtgaacgtctacaag
tggggcggaaagcgctgtatcggtctgtcgggtcacgtcgtcggcgtcgatttcccgccg
gagtacaacgactggcgcgacgtcgaaccggtcgaactcatcgacgcgcccatcgacaaa
cacccgacgcaagagaacatcgtcgccgcgctacgtcgcctcgcacgcaacgcccgccgc
gtcgtcatcgccactgactacgaccgcgagggcgaactcatcgggaaagaggcgtacgaa
ctcgtccgcgacgtgaacgaggacgtgcccgtagaccgcgtccgcttttcctccatcacc
gaccgcgaggtaaccgaagcgttcgacaaccccgacggactcgacttcaacctcgcagcg
gcgggcgaggcgagacagatcgtagacttggtgtggggtgccgcactcacgcgctttctc
tctctgtcggcgcggcaactcggcgacgacttcatctccgtcggtcgggtgcaaggtccc
acgctgaaactcatcgtagaccgcgaacgcgaaatcgaggcgttcgatcccgaggactac
tgggaactgttcgctgacctgcagaaggattcggagtcgttcgaggcgcagtacttctat
ctcgacgaagacggcaacgaggccgagcgcgtctgggacggcgacgacgccgaagaagcg
tacgagacgcttcgcaacgtcgaggcggccactgtggactccgttcgccgccgcacccgg
acggacgacccaccggccccgttcaacacgacgcagttcatccgtgcagcagggtcgctc
ggctactctgcccagcgcgcgatgagcatcgccgaagacctctacacggccgggtatatc
acgtatccgcggacggacaacaccgtctatccggaagatttggacccgcgagaacttctc
gatgcgttcaccgccaaccggacgttcggcgacgacgcccagaacctcctcgaacaagag
gagatagaacccaccgcgggcgacaacgagacgaccgaccacccgcccatccatccgact
ggcgaactcccctcgcggtcggacctcacggaggacgagtgggacgtgtacgaactggtc
gtccggcgcttcttcgctactgtcgcagaatccgcaaagtgggaacacctccgcgtcgtc
gccgatgcgggcgggctctccttgaaggcaaacggcaagcgactggtgaaagcgggctac
cacgaagtgtacccgtacttcaactcctcagagtcgttcgtccccgacgtagcggagggc
gaatcgctcgccgtcacggacacggagattgaggaaaagcagacccaaccgccccgtcgc
tacggccagtcgcgcctcatcgagacgatggagaagatgggtatcgggacgaaggcgacg
cggcacgacgtgattcagaaactctacgaccgcaactacatcgagagcgatccgccgcga
ccgacgcgactcgcccgcgccgtcgtcgaggcgtccgaggagttcgccgaactcatcgtg
agcgaggagatgaccgcccagttggaggcggacatgcaggctatcgcccgcggcgacgcc
tctctcgacgacgtgactgcggagtccagagagattctcgaagacgtgttcgaggggctg
atggaatcgggcgacgaagtggggaaacacctccagaagtcgctgaaagcggacaaaaca
gtgggtgcgtgtccggaatccgatcacgacctcgtggttcggaaaagccgccgcgggtcc
tacttcatcggctgtgacgggtacccggactgcacctacacgctcccgctcccctcgact
ggcaaaccgctcatcatggacgaggagtgtgacgaacacggtctgagccacgtgaagatg
ctcgccggccggaagacgttcgtccacggctgtccactctgtaaggccgaagaggccgac
gccgaggaggacttgatcatcggcgactgtccggaatgtggggcgggcgcggaatcggag
acgccgcaaaacggagacggtgaaaccgacggcgaacacggcgagttggcgataaagcgt
ctccgctccggttctcgacttgtcggctgtacccgctatcccgactgcgactactcgttg
cccctcccgcgtcgcggcgacatcgaggtgacggacgaggaatgtgaggaacacgacctg
ccggagattcgaatcacctacgacgacagcgaccgggaaccgtgggacctcggctgtcct
atctgcaactatcgtgcgtaccaagccgaacaggccggcggcgacgaactccagagcgtg
aagggaattggcgagaagaccgccgagaaactgaaagccgccggtatcgaggacgttccc
tcgctgaaagaggccgaaccggatgcacttgcggacctagtggacggcgttggaccggat
acagttcggaagtggcagtctgcggccgattaa
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