Halogeometricum borinquense: Hbor_28220
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Entry
Hbor_28220 CDS
T01359
Name
(GenBank) DNA-directed RNA polymerase, subunit A'
KO
K03041
DNA-directed RNA polymerase subunit A' [EC:
2.7.7.6
]
Organism
hbo
Halogeometricum borinquense
Pathway
hbo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hbo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Hbor_28220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbo03021
]
Hbor_28220
Enzymes [BR:
hbo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Hbor_28220
Transcription machinery [BR:
hbo03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
Hbor_28220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_5
HTH_3
Motif
Other DBs
NCBI-ProteinID:
ADQ68365
UniProt:
E4NLB6
LinkDB
All DBs
Position
complement(2691281..2694211)
Genome browser
AA seq
976 aa
AA seq
DB search
MQTPKEIGAIQFGLMDPETYRDMSATKVITADTYDDDGYPIDMGLMDPRLGVIDPGLECR
TCGSHSGSCNGHFGHIELAAPVIHVGFTKLIRRLLRSTCRDCGRLSLTEEEAEEFRDGLT
RTEELGEDWTDVLKSAVRQARKASRCPHCGAPQHDIKHEKPTTYYEVQDVLAGDYSERIA
NAMQPDEDDEDDTGMAPSELADQTGIALQRVNQILSGEFRPVGDDRKKLEKALDVDLTEE
DMNKLMPSDIRDWFEDIPDEDIVTLGIDPSRARPEWMILTVLPVPPVTARPSITLDNGQR
SEDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFIDNEISGTPPARHR
SGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPERVAREMTQT
MNVTERNLEQAQQYVRNGPEGHPGANYVKRPDGRRLKVTEKNCEELAEKVQAGWEVNRHL
IDGDIVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQTEE
ARAEARVLMRVQEQILSPRFGQNIIGAIQDHISGTYLLTNGNPHFTETQALDLLRATSID
TLPEPAGEEEDGQPYWTGRQLFSELLPDDLNLSFTSSTGDDVIIEDGQLIEGTIDEDAVG
AFGGEVVDTLAKVYSKTRSRVFINEVASLAMRAIMHFGFSIGIDDESIPQEAGEQVDEAI
DSAYERVEELIEIYEAGELESLPGRTVDETLEMKIMQQLGKARDSAGEIADDHFTDDNPA
VVMARSGARGSMLNLTQMAGCVGQQAVRGERINRGYEGRTLSHYQKEDLSAEAHGFVENS
YRGGLTPREFFFHAMGGREGLVDTAVRTSKSGYLQRRLINALSELEAQYDGTVRDTSGTI
VQFEFGEDGTSPVKVSSGEGDGIDVENITDRVLDAEFSSSEEKERFLGRREPPTNLSEYA
GPGLDKAQDTGVQSDD
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgcagacacccaaggagatcggggccatccagttcgggctgatggacccggagacgtac
cgtgacatgtccgcgacgaaggtcatcactgcggacacctacgacgacgacggctacccg
atagacatggggctgatggacccacgtctgggcgtcatcgaccccggtctggagtgccgg
acctgtggttcgcactcggggtcgtgtaacgggcacttcggccacatcgaactggccgcg
cccgtcatccacgtcggcttcacgaaactcatccgccgactcctgcgttcgacgtgccgc
gactgcgggcgtctttcgctgaccgaagaggaggcagaggagttccgtgacggccttact
cgaaccgaagaactcggcgaagactggacggacgtgctgaagtcggcggttcggcaggcc
cggaaggccagccgctgtccgcactgcggcgcgccccagcacgacatcaagcacgaaaag
ccgaccacgtactacgaggtccaagacgtgctcgcgggcgactactccgagcgcatcgct
aacgcgatgcagcccgacgaggacgacgaggacgacacggggatggccccctcggaactc
gctgaccagacgggtatcgcgcttcagcgcgtcaaccaaatcctctccggcgagttccgc
ccggtcggtgacgaccggaagaagctggagaaggcgctggacgtagacctcactgaggag
gacatgaacaagctgatgccctcggacatccgcgactggttcgaggacatcccggacgag
gatatcgtgacgctcggcatcgacccgagtcgcgcacgacccgagtggatgattctgacc
gtcctgcccgtcccgccggtgacggcgcgaccgtcgatcacgctggacaacggccagcgc
tcggaggacgacctgactcacaagctcgtggacattatccgcatcaaccagcggttcatg
gagaaccgcgaggcgggtgcaccgcaactcattatcgaggacctgtgggaactgctccag
tatcacgtcaccaccttcatcgacaacgagatttccggcacgccgcccgcccgtcaccgc
tccggacgtccgctgaagacgctcagccagcgactcaagggcaaagagggtcgcttccgt
ggctctctgtcagggaagcgtgtcaacttctccgcgcgtaccgtcatctcgccggacccg
acgctctcgctgaacgaagtcggagttccggaacgcgtcgcacgcgagatgacgcagacg
atgaacgtgaccgagcggaacctcgaacaggcccagcagtacgttcgcaacggtcccgag
ggtcaccccggcgcaaactacgtcaagcgacctgacggccgtcgtctgaaggtcactgag
aagaactgcgaggaactcgctgagaaggtgcaggctggctgggaggtcaaccgccacctg
atcgacggcgacatcgtcatcttcaaccgacagccgtcgctgcaccggatgtcgatcatg
gctcacgaagtggtcgtgatgccgtacaagacgttccgactgaacactgtcgtctgtccc
ccgtacaacgccgacttcgacggggacgagatgaacatgcacgccctccagacggaggag
gcccgtgcagaggcgcgcgtcctgatgcgcgtccaagagcagattctcagtccgcgcttc
gggcagaacattatcggtgcgattcaggaccacatctcggggacgtacctcctgacgaac
ggcaacccgcacttcaccgagacgcaggcactcgacctgctccgtgcgacgagcatcgac
acgctccctgaacccgcgggcgaagaggaggacggacagccttactggacgggtcggcaa
ctgttcagcgaactcctgccggacgacctgaacctctcgttcacctcctcgaccggtgac
gacgtgatcatcgaagacggccaactcatcgagggaaccatcgacgaggacgccgtcggt
gcattcggtggcgaagtcgtggacacgctggcgaaggtctactcgaagacccgctctcgc
gtgttcatcaacgaggtcgcctcgctggcgatgcgtgccatcatgcacttcgggttctcc
atcggtatcgacgacgagtcgattccgcaggaggccggcgaacaggtggacgaagctatc
gacagcgcatacgaacgcgtcgaggaactcatcgagatctacgaggcgggcgaactggag
tcgctgccgggccgcaccgtcgacgagacgctggagatgaagatcatgcagcaactcggc
aaggcgcgtgactccgctggtgaaatcgcggacgaccacttcaccgacgacaacccggcc
gtcgtcatggcccgatccggtgcgcgtgggtcgatgctgaacctcacgcagatggccggc
tgtgtcggccagcaggcagttcgcggtgagcgaatcaaccgcggatacgagggtcggacg
ctcagccactaccagaaagaggacctctccgccgaggcacacggcttcgtggagaacagt
tatcgcggcggcctgacgccacgggagttcttcttccacgcgatgggtggccgcgagggg
ctggtggacacggcagtccggacgtcgaagtccggatacctgcagcgccgtctcatcaac
gcgctgtccgaactagaagcgcagtacgacggcactgtccgtgacacctcgggcaccatt
gtccagttcgagttcggtgaggacggcacctcgcccgtgaaagtctcctccggtgaggga
gacggtatcgacgtcgagaacatcacagaccgcgtcctcgacgccgagttctcctccagc
gaggagaaagaacgcttcctcggacgccgcgaaccgccgacgaacctctccgagtacgcc
ggtcccggcctcgacaaggcacaggacacgggggtacaatccgatgactga
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