Halogeometricum borinquense: Hbor_30380
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Entry
Hbor_30380 CDS
T01359
Name
(GenBank) ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
hbo
Halogeometricum borinquense
Brite
KEGG Orthology (KO) [BR:
hbo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbo03400
]
Hbor_30380
Enzymes [BR:
hbo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hbor_30380
DNA repair and recombination proteins [BR:
hbo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Hbor_30380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
TetR_N
Motif
Other DBs
NCBI-ProteinID:
ADQ68575
UniProt:
E4NU55
LinkDB
All DBs
Position
pHBOR01:complement(72369..75212)
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AA seq
947 aa
AA seq
DB search
MTQPNDHQQDLIDSTDGIHVVDAGAGTGKTFTVTRRYAEIVDQDEVAPADVLLVTFTNNA
ATEMKDRIVSHCGYGMRELSDAPIQTFHSLCHDLLMEHGFEAPTHLGIDDRITGSTRILE
DETVEKAQFREFIRRFSDDHAAYDDFFRAIEDPVELLGLLTQLASKGVFPTADGWYRNGE
RHLDGDFEAFSELFDELNQPRNGGSKQSRLRSKLSRYGRNKCYLPDAPDKSTIRGGRGEK
QVPADVARRAFEEDRADLKQFVHDVYFEYLEFALSRNYLNFGFLQLFAFVLLCDDHSLRD
DVAFEYVMIDEFQDSSEIQFKLALLLADTNNLCVVGDWKQSIYSFQYAAVENITEFESRL
DRFVAELNEDGERVSWATRPITDIELVENYRSTQAILDFSEHSLVTPAASTDKVDVEEVQ
DRIVSLSANTPCENSNIEAIQHEDEHEAILTKIQEIAGNEDYQVEEDGELRPPEYGDVAV
LTRTRDFGRELLSAAAEYGLPMSYEGGIELFRSDPAKLLLAWLRILDADSERGWAVVLEE
AGYTLDEIEYILDTERYPDNMQAFKTELAELETIGGVAQRVFSRYNYDGAHADVLLTTVQ
SIHSATTVTRGDLIQFIERGIENGSTQEVHASAGVNSVTVQTIHAAKGLEHPIVILVNMN
SHRFPPSGGNSNTITFDDPIGLRQRKRYADDYGYPHIHDNWRTDVLRTCLPRGYDEERRL
LYVSMTRAESHLVFSAGENPNTFFEELPVAVEEITPEVEADDRSETTQANLQISVPTPAG
PVGHSPHTLMRDDVFEDVAGGRGTEFGTQVHEFAERYALGADVEPSKGNDDESHLKTLID
SLDGEIRVEEDVYLPLTVDGERVTISGVVDLVHILPDTVEIIDFKTDRGRHAEAEYRKQL
SVYYHVLHECFPERDVTAAIFYTAEATRVDINPLSKADIAELTRAVL
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgacccaaccgaacgaccatcaacaggacctgatcgacagtactgacggcattcacgtc
gttgacgccggtgccggaacggggaagaccttcactgtcacccgccggtacgcggagatt
gtcgatcaggacgaggttgcaccggcggacgtcctcctcgtgacgttcacgaataacgcg
gcgaccgagatgaaagaccggatcgtttcccactgcggctacgggatgcgggaactctct
gacgctccgattcagacgttccatagtctctgtcacgacctgctcatggaacatgggttc
gaggcaccgacgcacctcggcatcgacgaccgaattactggttcgacgcgtatccttgag
gacgagactgtcgagaaagcgcagttccgtgagttcatccgccggttcagcgacgaccac
gctgcgtatgacgacttcttccgtgctatcgaagacccggtcgaactcctcggattactc
acacagctcgcatcaaaaggcgtctttccaacggccgatggctggtaccgaaacggcgaa
cgccatctggacggtgatttcgaggcgttcagcgaactgttcgacgagttgaatcaaccg
cgaaacgggggcagcaaacagtcgcggcttcgttcgaagcttagccgctacgggcggaac
aaatgttatctcccggacgctcccgacaaatcgacaatccgtggtggccggggggagaaa
caggtccctgccgacgttgcacgtcgggcgttcgaggaggaccgagcggacctcaagcag
ttcgttcacgacgtgtatttcgagtatctcgaattcgcgctgagccggaattacctcaac
ttcggctttctccagttgtttgccttcgtcctcctctgtgacgaccacagcctccgcgac
gatgtcgccttcgagtacgtgatgatcgacgagtttcaggactcaagcgagatccagttc
aaactcgcactcttgctcgcggacacgaacaacctctgtgtcgtcggtgactggaagcag
agcatctactcgttccagtacgccgcggtcgagaatattaccgagttcgagtctcgactg
gatcggttcgtcgcggaactgaacgaggacggcgaacgagtgtcgtgggcgactcgccct
atcacagacatcgaactagtcgagaactaccgttcgacgcaggctatcttggacttctcc
gaacacagtttggtgacgcccgccgcgagtacagacaaggtcgatgtcgaagaggtccaa
gaccgaatcgtgtcgctctccgcgaacacgccctgcgagaactcgaatatcgaggcgatt
cagcacgaggacgaacacgaagccatcttgacgaagattcaggaaatcgcggggaacgag
gactatcaggtcgaagaagacggtgagcttcgaccgcccgagtacggagacgttgcagtt
ctcacccggacacgggacttcgggcgcgaactactgtcggccgcggcggagtacggactg
ccgatgtcgtacgaggggggaattgagttgttccgctctgatcccgcgaagcttctattg
gcgtggcttcgcattctcgacgccgattccgagcgcgggtgggcggtcgtcctcgaagag
gcaggctacacactggacgagatcgagtacatcctcgataccgagcgctaccccgataac
atgcaggcgttcaagaccgagttggcggagcttgagaccatcggcggggttgcacagcgc
gtcttctcccgatataactacgatggggcgcacgctgacgtgttgttgacgacggttcaa
tcgatacacagcgcgacgacggtaacgcgtggtgacctcatccagtttatcgaacgcggc
atcgaaaacggaagcacgcaggaggttcacgcgagcgccggggtgaactcagtaactgtc
cagacgattcacgcggctaagggtctcgaacatcccatcgtcatccttgtgaacatgaac
agccatcgtttcccgccgtccggcgggaacagtaacacgatcacgttcgatgaccccatc
ggtctccgtcagcggaaacgctacgctgacgactacggctacccgcatatccacgataac
tggcggactgacgtgctccgaacctgcttgccgcgtgggtacgacgaggagcgacgcttg
ctctatgtctcgatgactcgtgcggagagccatctggtcttttcggcaggcgagaatccg
aacacgttcttcgaggaactgccggttgctgtcgaagaaatcactcccgaggtcgaagca
gacgaccgtagcgagacgacacaggcgaacctgcagatctcggtgccgacacctgcggga
ccggtcgggcactcaccacacacgttgatgcgtgacgacgtgttcgaggatgttgcaggc
ggaaggggaactgagttcggaacacaggtccacgagttcgccgaacggtacgcactcgga
gcggatgttgaaccgtcgaaaggtaacgacgatgagtctcatctcaagaccctgatcgac
tcacttgacggtgagatacgggtcgaagaggacgtgtatctcccgcttaccgtcgatggt
gaacgagtgactatctcaggtgtggttgacctcgttcatattctccctgacactgtcgaa
atcatcgatttcaaaacagatcgcggacggcacgcagaggccgaatatcggaagcaactc
agcgtgtactatcacgtcttgcacgagtgttttcccgaacgcgatgtgaccgccgccatc
ttctacacggccgaggcgacgcgtgtcgatatcaacccgttgtcgaaagcggacatagcc
gagttgacgagagcggtgctgtaa
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