Halomonas sp. TD01: HPTD01_1242
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Entry
HPTD01_1242 CDS
T08977
Name
(GenBank) ATP-dependent DNA helicase UvrD/PcrA (EC
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hbp
Halomonas sp. TD01
Pathway
hbp03420
Nucleotide excision repair
hbp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPTD01_1242
03430 Mismatch repair
HPTD01_1242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbp03400
]
HPTD01_1242
Enzymes [BR:
hbp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPTD01_1242
DNA repair and recombination proteins [BR:
hbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPTD01_1242
MMR (mismatch excision repair)
Other MMR factors
HPTD01_1242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_12
Viral_helicase1
YfdX
Motif
Other DBs
NCBI-ProteinID:
CAH1042764
UniProt:
A0AA35GWZ6
LinkDB
All DBs
Position
HaloTd01MainCirc:complement(1286571..1288769)
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AA seq
732 aa
AA seq
DB search
MDDVTAILDQLNPAQREAVSAPQGNLLVLAGAGSGKTRVLVHRIAWLMQAEGLSPYALLA
VTFTNKAAREMRTRLEALLSISMRHVWVGTFHSIAHRLLRTHWQDARLPQHFQIIDSDDQ
LRLVKRMLKDYSIDDERFPPRQVQGFISGCKEEGLRPHQVNVDGDGYLGQMVELYERYQF
ICERGGLVDFGELLLRSLELLRDNPPLLNHYRERFGHVLVDEFQDTNTLQYAWLKLLTGL
QTPMTAVGDDDQSIYGWRGAKVENIRRFEEEFPNTHTVRLEQNYRSTSAILEAANTLISH
NSERLGKNLWTDGVEGDPISVYAGFNDLEEARYIVDTIKEKVDEGFNRRDVAILYRSNAQ
SRLLEETLIRQGMPYRIYGGHRFYERLEIKNALAYLRLLLNRDDDASLERVINVPTRGIG
TRTVEIVRHRAREQSISLWQALHDAIQDGTLKGRAANAVQTFANLIEQLDNDASGLPLHE
IIDHITTHTGLIEHHKSERGEKGQARVENLEELVTAARAFTHGDVFETPEAGEGMAALEA
FLSEAALNAGDHEADEFEDSVQLMTLHSAKGLEFPVVFIAGVEEGLFPHKMSIEEPGRLE
EERRLCYVGVTRAMQKLYLTHAETRRLHGKEVFPRPSRFLRELPPHLLEEVRLRGHISRP
VTASRSSFAQQRIESDGDLPALHVGQRVMHPVFGEGIILNAEGEGARARVQVSFEGEGVK
WLVLGFAKLAPL
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgtcacggcgatacttgatcagcttaaccctgcccagcgcgaggcagtgagc
gcaccccagggtaacttattggtactggcgggtgccggctccggtaaaacccgcgtgctg
gttcatcgcattgcttggctaatgcaggccgaagggctttctccctatgccctgctggcc
gttacgtttaccaataaggctgcgcgggaaatgcgtacccgcctggaagcgctgctgagc
atctccatgcgacatgtgtgggtcggcacgtttcactctatcgctcatcgcctgctgcgc
acccactggcaggatgctcggctacctcagcacttccaaatcattgactccgatgaccag
ttgcggctggtaaagcgaatgctcaaagattactccatcgatgatgagcgcttcccgccc
cgccaagtacaaggctttatctctggctgcaaagaggaaggacttcgcccccaccaagtg
aacgtggacggcgatggttatcttggccagatggtagagctttatgagcgctaccaattt
atctgcgaacgcggcggcctagtggacttcggtgaactgctactgcgcagcctagaactg
ttacgtgacaacccgcctttgctaaatcattaccgcgagcgctttggtcatgtattagtc
gatgagtttcaggacaccaatacgctgcaatacgcgtggttaaaactactcacgggtctg
caaacacccatgaccgccgtcggtgacgatgaccagtcaatttacggttggcgtggcgcc
aaagtggagaatattcgccgctttgaggaggagtttcctaacactcataccgtacgccta
gagcagaactaccgctccacaagcgcgattctggaggccgctaatacgctgatcagtcat
aacagcgagcggctgggtaaaaatctgtggactgacggtgtcgaaggcgaccctatttct
gtctacgccgggtttaacgatttagaagaagcccgctatatcgtcgataccatcaaagaa
aaggtcgatgaagggtttaatcgccgcgatgttgccattctttaccgctcaaatgctcaa
tcgcgtttgctggaagagacgctgatccgccaaggcatgccctaccgtatttacgggggg
catcgcttctatgagcgcttagaaatcaaaaatgccctagcctacctgcgcctactgcta
aatcgtgatgacgatgcttccctggagcgcgtgattaacgtacccacccgtggcattggc
acccgcacagtagaaattgtgcgccatcgcgctcgggaacaaagcatttcactatggcag
gcgctgcacgatgccattcaagacggcacgctaaaaggccgtgcggccaacgccgtgcag
acatttgccaatctcattgagcaattagacaacgatgcgtctggcctgccgctgcatgaa
attatcgaccacatcaccactcataccggccttatcgaacatcacaagagcgagcgcggc
gaaaaaggtcaagcacgtgtggaaaacctggaagaactggtgaccgctgctcgcgccttt
acgcatggcgatgtttttgaaaccccagaggcaggtgaaggcatggcggctttggaagcg
tttctttccgaggcggcgcttaatgcaggcgaccatgaagccgatgagtttgaagacagt
gtgcaactgatgaccctgcactctgccaaaggcttggagtttcccgtggtgtttattgcc
ggcgttgaagagggcctgtttcctcataaaatgtcgatcgaagagccagggcggctcgaa
gaggaaaggcggctttgctatgtcggcgttacccgagcgatgcagaaactctacctgacg
catgctgaaacccgccgcctgcacggcaaagaagtgtttcccagaccatcgcgctttcta
cgtgaacttccgccccacctattggaagaagtccgcctacgtggccatatttcccgcccc
gttaccgcctcgcgctctagctttgcgcaacagcgtattgaaagcgacggcgacttaccg
gcactgcatgtaggccagcgggtaatgcatccagtgtttggcgaaggcatcattcttaat
gcggaaggcgaaggtgcccgcgcccgagtacaggtcagctttgaaggtgaaggggtgaaa
tggctcgtactagggtttgccaaactagcaccactttga
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