Halomonas sp. TD01: HPTD01_1990
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Entry
HPTD01_1990 CDS
T08977
Name
(GenBank) OsmC-like N-terminal domain / Ribosomal protein S12p methylthiotransferase accessory factor YcaO
KO
K09136
ribosomal protein S12 methylthiotransferase accessory factor
Organism
hbp
Halomonas sp. TD01
Brite
KEGG Orthology (KO) [BR:
hbp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hbp03009
]
HPTD01_1990
Ribosome biogenesis [BR:
hbp03009
]
Prokaryotic type
ribosomal protein modification factors
HPTD01_1990
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
YcaO_C
YcaO
OsmC
Motif
Other DBs
NCBI-ProteinID:
CAH1043512
UniProt:
A0AA35GYH0
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All DBs
Position
HaloTd01MainCirc:2146280..2148463
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AA seq
727 aa
AA seq
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MEIKVNYLDNLRLEAKFDDFTVISDQPIRYKGDGSAPGPFDYFLASSAMCAAYFVKVYCN
ARDIPTENIRLSQNNIVDPEDRYKQIFKIQVELPEDISEKDRQGILRSIDRCTVKKVVQT
GPEFQIETVENIDEDAQALLMGAPEGSATYIPGKDLPLEQTIANMSAMLADLGMKIEIAS
WRNIVPHVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLSCNFFYNDQYFGEEI
ANSDFVHYPNEKWFQPGPNDELPAEILDEHCLAIYNPEGELCGSNLIDTNSGREDRGIVS
LPFVRQSDGKTVYFPSNLIENLFLSNGMSAGNTLVEAQVQCLSEIFERAVKREILEQELT
LPDVPQAVLAKYPNIVEGINALEAQGFPVLVKDASMGGQFPVMCVTLMNPRTGGVFASFG
AHPSFEVALERSLTELLQGRSFEGLNDLPLPTFNSQTVTEPNNFVEHFIDSVGVVSWRFF
SAKPDFEFSEWDFSGSNQEEADTLFEIFEELGAEVYMAVHEDLGAPVCRILVPGYSEVYP
IEDLIWDNTNKALDYREDILNLHRLDDDQLTDLVERLEESQMDDHADIITLIGIEFDENT
VWGQLTILELKLLVYLALQRHEEALDCVQMFLQYNDNTVERGLFYQAVNAVLEIVLDDEL
ELDDYLHNFQRMFSETTMAAVVGSVSGEVRFHGLTPTNMQLEGLERHQRLIESYKKLHAA
RAAKAIK
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggaaattaaagtcaattatctcgacaacctccgtttagaggccaagttcgacgatttt
acggttatctccgatcagccgattcgctataaaggcgatggctcagcccctggtccgttc
gactactttctagcgtcgtcggcgatgtgcgcggcttactttgtcaaggtttactgcaac
gcgcgagatattcctaccgagaatattcgcctgtcccagaacaatatcgtcgacccggaa
gatcgttataagcagattttcaaaatccaggtcgagctgccggaagatatttctgaaaag
gatcgccagggtattttgcgctccatcgaccgttgcacggtgaagaaggttgttcaaacc
ggccccgagtttcagattgaaacggtagagaatatcgatgaggacgcccaggcgctgctg
atgggggcgccggaaggcagcgctacctacatcccaggtaaagatttgccgctggagcag
accattgccaatatgagcgcgatgctggctgacctgggcatgaaaattgagatcgcctcc
tggcgtaatatcgtgccccacgtctggtcgctacatattcgcgatgccgcctctcctatg
tgctttaccaacggcaaaggggctaccaaagagagcgcgctgtgctccgcactgggcgaa
tttattgagcgcttgagctgcaacttcttctacaacgaccagtactttggtgaagaaatt
gccaacagcgactttgttcactaccccaatgaaaaatggtttcagccggggccgaacgat
gagcttcccgctgaaatcctcgacgaacactgtctggctatttataacccggaaggcgag
ctgtgtggctccaatctgattgataccaactccgggcgtgaagatcggggcattgtatcg
ctaccgtttgtacgtcagtccgatggcaaaacggtctattttccctccaacttaatcgaa
aatctgttcctaagtaacggcatgagcgcgggcaataccctagtggaagcccaggtgcag
tgcttgtcggaaatcttcgagcgggcggtgaagcgcgaaatcctcgaacaggagttaacc
ttgccggatgtgccgcaagcggtactggcaaaatatccgaacattgtggaaggcattaac
gccttggaagctcagggtttcccagtgttggtaaaagatgcctccatgggtggccagttc
ccggtaatgtgcgtcaccttaatgaacccgcgtactggcggcgtatttgcttcgtttggc
gcacacccaagctttgaagtggcgctggagcgtagcttgacggagctgttgcaaggccgc
agcttcgaagggttaaacgatcttccgctaccaacgtttaactcgcaaaccgtgactgag
cctaacaattttgttgagcactttatcgactcggtgggtgtggtttcttggcgcttcttt
agtgccaaacccgattttgagttcagcgaatgggacttctccggcagcaaccaagaagaa
gccgacacgctgtttgagatctttgaagagctgggggccgaagtgtacatggcagtacac
gaagacttgggcgcaccggtctgtcgcattctggtgccaggttattcagaagtgtatccc
atcgaagatctgatctgggataacaccaataaggcgttggattaccgcgaggatatcctc
aacctgcaccgcctcgacgacgatcagctcactgatctggtcgagcggctggaagagagc
caaatggatgatcacgccgatatcatcacgctgattggtatcgagttcgatgagaacacc
gtgtgggggcagctaacgatactagagctgaagctgctggtttaccttgcgctgcaacgc
catgaagaggcgctggactgcgtgcagatgttcctgcagtacaacgacaacaccgttgaa
cgcggactgttctatcaggcagtgaacgcggtactggaaattgtattggatgatgagctg
gaacttgacgattatctgcacaacttccagcgcatgttcagtgaaacgaccatggcggct
gtcgtgggttcggtgagtggcgaagtacgcttccatggcctaacgccgactaacatgcag
ttagaaggtctggagcgccatcagcgcttgatcgaaagttacaaaaagctccatgcggct
cgggcagcaaaagcgattaaataa
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