Halomonas sp. TD01: HPTD01_2153
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Entry
HPTD01_2153 CDS
T08977
Name
(GenBank) Exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
hbp
Halomonas sp. TD01
Brite
KEGG Orthology (KO) [BR:
hbp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbp03400
]
HPTD01_2153
DNA repair and recombination proteins [BR:
hbp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HPTD01_2153
Archaeal homologous recombinant proteins
HPTD01_2153
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
Motif
Other DBs
NCBI-ProteinID:
CAH1043675
UniProt:
A0AA35GXA9
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All DBs
Position
HaloTd01MainCirc:2323749..2326814
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AA seq
1021 aa
AA seq
DB search
MTPLTLTMQAFGPFAGSETIDFTALGKSPLFLINGPTGAGKSSILDAICFALYGQTTGND
RDAGQMRCDQAAATLLTEVSLDFRLRDSAYRVRRVPQQERPKATGEGTTTQSAEAQLWRL
TPEGDEDECLVARKVTDANSQLHALIGLDANQFRQVMVLPQGKFRELLLAESKDREKIFS
QLFQTQIFQRIEERLRAQANQIERAVNDHRQHINGILAGGELESEAALAQEVEALTPQVG
QARQRFETAQQQRRSAEQRRDEAQALQRQFEARDSLAAEKARHLEQQAQITAFQSRLTQS
DHAQALRPYSAALVQAQQALTTAQEEQRQADAALTTQRTNTEQAKRTFEAARQRQTELPA
LRERHRQLGEFIHKSQQLSELEARWQAAQTAWQQADDILKRDEAQLDGIRQQGEALSVTL
EQLQTESQQLASAPAELSRHESLLAQRQELEELMRQGREFTAQQQQATEALQGRRSEAEQ
AKRHATEQEMRWHQGQAALLARTLKEDAPCPVCGSLEHPAPAFKHTDIVTQAQVEAARSA
QEQARHALHTAERQDHQLAQQNSYNAEQVQRRTHQLGEWASQPPFELQQACEQLRRQVER
RKNVESEINQQTSTRDELRRDWGTLDKQLNAQRPQVEKAKEEALRLESQRDQLSQSLPED
ARNPLAMRQTLTELDNQIAELEQAWERAQQVLSTSETQQARAEEQLRGANQRVARSQQAY
EQAQNEWQTALQASSFESEAAFQAAKLEDNQRQDLVRQVEAYQRRLAELEGALQNYHAQL
AEKTPPDIAALTTLTQAAQAEEHTQLEEWRAMDGRLKALQGIRQKLTAAHAAQAELEAQY
RVWGTLSEVANGRTGNRISLQRFVLGVLLDDVLIQASERLVRMSRGRYQLVRREDPSKGN
KASGLELDVADTYTGKSRSVATLSGGESFMAALALALGLSDVVQAYAGGIQLDTLFIDEG
FGSLDQDALDQAISMLSELQMGGRMIGIISHVSELKEQMPVRVEVRASRLGSSVEVKGAL
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgttaacgctcaccatgcaggcgtttggcccctttgcaggcagtgaaacgatc
gactttactgcgctgggcaaaagcccgttgtttctgattaacggccccacgggcgcaggg
aaaagctcaatattagatgccatctgttttgcgctttacggtcaaaccaccggcaatgac
cgtgatgccggccaaatgcgctgcgaccaagctgctgctaccttgttgaccgaggtgagc
ttggattttcgcctgcgcgatagtgcttaccgagtgcgccgggtgccccagcaggagcgc
cccaaggccactggtgaaggcactaccacacaaagcgctgaagcccagctgtggcggctt
accccggaaggtgatgaggatgaatgtttggtggcgcgtaaggtcaccgatgccaacagc
cagctgcacgctttaataggtctggatgctaatcaatttcgccaagtaatggtgctcccc
caggggaagtttcgtgaactgttgttagcggaatcgaaagaccgcgagaaaattttttct
cagttgtttcaaacccagatttttcagcgtattgaagagcgcctgcgtgcccaggcgaat
caaatagagcgagcggtgaatgatcatcgccaacatatcaatggcattttggccgggggc
gagctggaaagcgaagcggcattggcgcaagaagtagaggcgctaaccccgcaagtaggg
caagcgcgtcagcgttttgaaaccgctcagcagcagcgccgtagtgctgaacagcgacga
gatgaagcccaagcgttacagcgccaatttgaagcgcgagacagcctcgccgcagagaaa
gcacgccaccttgagcagcaagcgcaaataaccgcctttcagagccgcttgacccaaagc
gaccacgctcaagcgctacgaccttacagtgctgcgttagtccaagcgcagcaggcactc
actaccgcccaagaagagcagcgacaagccgatgccgcgcttactacccagcgtacgaat
actgaacaagccaagcgtacctttgaagcggcacgccagcgccagaccgaactgcccgca
ctacgtgagcgccatcgtcagttgggcgagtttatccacaaaagccagcagttaagtgag
cttgaagcgcgctggcaagcggcacaaaccgcttggcagcaagccgatgacatacttaag
cgtgatgaagctcaattagacggtattcgtcagcaaggtgaagcgctaagcgttactctt
gagcagctgcaaacggaaagtcagcagttggccagcgcccctgcagagctgagccgccac
gagagcctgctagctcagcgacaggagttggaggagctgatgcggcaggggcgtgagttt
accgctcaacaacaacaggcaacagaggcgcttcaaggtcggcgcagcgaagcagaacag
gctaagcgccacgcaactgagcaagagatgcgctggcaccaagggcaagccgcattgcta
gcgcgcacccttaaagaggacgcaccttgcccagtgtgtggcagccttgagcacccagct
ccggcgtttaaacatactgacattgttacccaagcgcaggtggaagcagcccgttcagcc
caggagcaagcgcgccacgcattacataccgccgagcgtcaggatcaccagttagcacaa
cagaatagttacaacgctgagcaggtgcagcgccgtactcaccagcttggtgagtgggct
agccaaccgccgtttgagttgcaacaggcctgcgaacaattgcgccgccaagtcgagcgt
cggaaaaatgtcgaaagtgagattaaccagcaaaccagtacccgtgacgagctacgccgt
gactggggcacgctggataaacagctcaacgcccagcggcctcaggttgaaaaggccaaa
gaggaggcgttacggctagagagccagcgcgatcaattaagccaatcactgccagaagat
gcccgtaacccgttggccatgcgccaaacgctcactgaacttgataaccaaattgctgag
cttgaacaggcctgggagcgtgcacaacaggtgctttcgacgagcgaaacccagcaggcg
cgggcagaagagcagctgcgtggcgcgaatcagcgggtagcgcgtagccagcaagcgtat
gagcaggcccagaatgagtggcaaacggcactacaagccagttcgtttgaaagtgaagct
gcctttcaggctgctaagctagaagataaccaacgtcaagacctggttcgccaagtagag
gcgtatcagcgccgcttggctgaacttgaaggcgcgctacagaattaccatgcccaactg
gccgaaaaaacgccgccggatattgctgcactcactacactcacccaagccgcccaagct
gaggaacatacccaactagaggagtggcgggcgatggatgggcggttaaaggccttgcag
ggtattcgtcaaaaactgaccgctgcccacgcggcccaggccgagcttgaagcccagtat
cgggtgtggggaacgctcagcgaggtggccaacgggcggactggtaatcgcatcagcctg
cagcggtttgtattgggggtgctgctggacgacgtactgattcaggcgtctgaacggctg
gtgcgtatgagccgtgggcgctaccagttggtgcgccgcgaagatccctctaaaggcaat
aaagcgtcaggattggagctagacgttgccgacacctataccggcaagagccgctcggta
gcgacgctctccggtggtgagtcgtttatggcggccttggcgctggcgctagggctttct
gatgtggtgcaggcctacgcaggcggtattcagttggatacgctatttattgatgagggc
tttggtagccttgatcaggatgcattagaccaagcgatttcgatgctcagcgagttacaa
atgggcgggcgaatgatcgggattatctctcatgtcagcgaactcaaagagcaaatgcct
gtccgtgttgaagtgcgtgccagccgacttggtagctcggtggaagtgaagggcgcgctt
ctttaa
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