Halomonas sp. TD01: HPTD01_2280
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Entry
HPTD01_2280 CDS
T08977
Name
(GenBank) Exodeoxyribonuclease V beta chain (EC
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
hbp
Halomonas sp. TD01
Pathway
hbp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HPTD01_2280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbp03400
]
HPTD01_2280
Enzymes [BR:
hbp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HPTD01_2280
DNA repair and recombination proteins [BR:
hbp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HPTD01_2280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CAH1043802
UniProt:
A0AA35E2L4
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All DBs
Position
HaloTd01MainCirc:complement(2450083..2453814)
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AA seq
1243 aa
AA seq
DB search
MSQNASPMPLNPLTLPLHGSRLIEASAGTGKTFTIALLYVRLVLGGQHSEDDSAFVRPLT
PPEILVVTFTNAATQELRERIRHRLVEAAAVFRATDDAGSDSLLIQLRSQYPEATWPACA
RRLELAAEWMDEAAVSTIHSWCYRMLREHAFDSGSLFSLNLENDQRELEQEVVRDYWRTF
YYPLDADALGSITRYWKSPDKLHEDVRKLLHESDALGSQRPAPADTLSAADAERSARLEE
LKAPWRAWVHELRQLFDDGQTAKHFAPGKMRKDHRGKWLDKIQQWAESDLVSPDMDKKAT
AWKRLTPAGIAEIWNGEPPNHPAFGAFEALPAALNALPEPRNDLLIHAVQWCKVRMEREQ
ERRAEMGPNDLLTHLDRALQGPNKDALAAQILRQFPVALIDEFQDTDPIQYRIFNAVYDV
ANPRRDAAMLLIGDPKQAIYAFRGADIFTYLQARQDTAGRHVTLGTNFRSSRAMVGAVNH
CFHYADQHPAGAFLFREDGGENPLPFLSVNAKGRDEQLVHQGKPLPAMTLWPLTSEEPLS
KTAYQTEMAERCASYMVELLTAGQSGNKEGKSGFQKGDDLSPLKPSDMAVLVNGLQEARA
IRLALASRGVKSVYLSDHDKVFSSPMAKQVERWLRACAEPLASSRQAEAHLRAALATPVL
GLSLADLDHLQQNELAWEARVEQFSHYHRLWQRQGVLPLVRRMMVDFDIPARLLGEFEEG
ERLLTDLLHLGELLQQASAELDGEHALIRFLYESIADPEGHGDSHKLRLESDADLVKVVT
IHKSKGLEYPLVFLPFIANHRPVSDKDIPLRWHDAQGNLQLSLSADEETLATADRERLGE
DLRKLYVALTRARHATWLGLAPLQGLENSALGYLISGGKTLVPAELTTALEALAQGSEIA
VNEPPAPTAQRLALSAQSAEQSATLGHARTPTRPAKEHWWIASYSALRLSGTLTAPTATP
LEPTTAQEATAFEVLDEPQELSQLAQQETFHLHKFPRGPGPGTFLHGLLEWAGRQGFAAA
ANDQDSLNDMLWRRVQLRGWQAWQEPLAGWLSALLTTPLPLAAPNQQSVTLTELSSYQVE
LEFWLAAKRVNTQAIDALVSKHLLPGVERPALDADTLNGMLKGFIDLAFEHQGRFYVLDW
KSNYLGPSDSDYEPDALRHALLAKRYDLQAALYLLAMHRLLKARLPNYDPHQHLGGSMTV
FLRGSRSPGRGVFSEPAPVELIEALDSLFAGASFSSPAQEATV
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgagccagaacgcctctccaatgccgcttaaccctcttacgctaccgcttcacggcagc
cgcctgattgaagccagtgcgggcacgggcaaaacctttaccatcgcgctgctctacgtg
cgcctggtgctgggcgggcagcacagcgaagacgacagcgcctttgtacgcccgctcacc
ccgccggaaattctggtagtcaccttcaccaatgccgccacccaggaactgcgcgaacgc
attcgccaccggctggtggaagctgcagcggtatttagggccactgatgatgctggttcg
gattccttgctcatccaactgcgcagccaataccccgaggccacttggcccgcctgcgct
cgccgcctggagctagccgccgaatggatggacgaagccgcggtttccaccatccacagc
tggtgctatcgcatgctgcgcgaacacgcctttgatagtggcagcctgttctcgctcaac
ctggaaaacgaccagcgcgaactggaacaagaagtggtgcgcgactactggcgcaccttc
tactacccactggatgccgacgccctgggcagcattaccagatactggaaatcgccggat
aaactccacgaagatgtacgcaagttgctccacgaaagcgacgcactcggcagccaacgc
cccgcgccagccgacacattaagcgctgccgacgccgaacgcagcgcacgccttgaagaa
ctaaaagctccttggcgagcgtgggtacatgaactacggcagctttttgacgatggccaa
acagccaagcactttgcccctggcaaaatgcgcaaagatcatcgaggaaaatggctggat
aaaattcagcaatgggcggaaagcgaccttgtcagtcctgatatggataagaaggccact
gcatggaagcgactgacaccggcgggcattgctgaaatctggaacggagagccaccgaac
cacccagcgtttggggcgtttgaggcactgcccgccgccctcaacgccttgcccgaaccg
cgcaacgacctgttgattcacgccgtgcagtggtgcaaagtgcgtatggagcgggagcaa
gaacgccgtgccgagatgggccccaacgacctgctcacccatttagaccgcgccctgcaa
ggccccaacaaagatgccctggcagcgcagattctgcgccagttccccgtcgcgctgatt
gatgagttccaggacaccgacccgattcagtaccgcatttttaacgcggtctatgacgtc
gccaacccacgccgcgacgccgccatgctactgatcggcgaccccaagcaggccatctac
gcctttcgcggcgcggatatcttcacctacctgcaggctcgccaagacaccgccggccgc
cacgtcacgctaggcaccaacttccgctccagccgcgccatggtgggagccgtcaatcac
tgcttccactacgccgaccagcacccggctggggcgtttctatttcgcgaagacggtggc
gaaaacccgctgccgttcttatcggtaaatgccaaaggccgcgacgaacaattggtgcac
caaggtaagccgctgcccgccatgacactttggccgttaacaagcgaagaaccactttcc
aaaaccgcctaccagaccgagatggccgaacgctgcgcctcttatatggtggaattgctc
acggcaggccaaagcggcaataaagaaggcaaaagcggttttcagaaaggcgatgaccta
agcccgctaaaaccttccgatatggcagtactggtcaacggcctgcaggaagcccgtgcc
attcgcttagcgctggccagccgtggagtaaagagtgtttacctttccgaccacgacaag
gtgttcagctcgcccatggccaagcaggtagaacgctggctgcgcgcctgcgccgagccg
ttagccagttcccgccaagccgaagcccatctgcgagccgccttggccacgccagtattg
gggctaagcctagccgaccttgatcacctgcaacaaaacgaactggcctgggaagcgcgg
gtggagcaattcagccactaccatcgcctatggcagcgccagggtgtgctgcccctggta
cgccgcatgatggtggatttcgacattcccgcccgcctactgggggaattcgaagagggt
gagcgcttgctcaccgacctgctgcacttaggcgaactgctgcagcaagccagcgctgaa
ctggacggcgaacacgcgctgattcgctttctgtatgaatccattgccgacccggaaggc
cacggcgacagccacaagttgcgcctggaaagcgacgcggatttggtcaaggtggtcacc
atccacaaatccaaaggccttgagtacccgctggtattcctgccgtttatcgccaaccac
cgcccagtgagcgataaagacataccgctgcgctggcacgacgcccaaggcaatcttcag
ctcagcctaagcgccgatgaagaaacgctggctaccgccgaccgcgaacgtttaggggaa
gacctgcgcaagctttatgtggcgctaacccgcgcccgccacgcgacttggctggggcta
gccccacttcaggggttagaaaatagcgccctcggctacctgattagcggcggaaaaacg
cttgtaccggcggagctaaccaccgcgctggaagcgctggcacaaggcagcgagattgct
gtcaacgagccaccggcacccactgcccagcgccttgcactctctgcacaaagcgccgaa
caaagcgccacgcttgggcacgcccgcacgcccacgcgcccggccaaggaacactggtgg
attgccagctactcggcgctgcgcctttccggcacgctcaccgcccccacggccacgcca
ctggagccgaccaccgcccaggaagctaccgcgtttgaagtattggatgagccgcaggaa
ctatcccagctggcccagcaggaaacatttcatctgcataaatttcccagaggcccaggg
ccgggaacatttttgcatggcttactggaatgggcaggcaggcaaggctttgcagccgct
gctaacgatcaagattcactcaacgatatgctatggcggcgcgtacagctgcgcggctgg
caagcatggcaggaaccgctagcaggctggctttcagcgctactcaccacaccgttaccg
ctggccgcgccaaaccaacaaagcgtcacactgaccgaactcagcagctaccaagtggaa
ctagagttctggctagccgccaaacgggtcaacacccaggcgattgatgccctggtaagc
aagcacttactgccaggggttgagcgcccagcgctggatgccgataccctaaacggcatg
ctgaaaggctttatcgatttagccttcgagcaccaagggcgcttttacgtgctggactgg
aaatcgaactatttagggcccagtgatagcgattacgaaccggacgccttgcgccatgcg
ctgctggccaagcgctacgacctccaggccgcgctttacctgctggctatgcaccggctg
ctaaaagcgcgcctgcccaactacgacccgcaccagcacttgggtggctcaatgacggta
tttctacgcggcagccgcagcccagggcgcggggtattttccgagcccgccccggttgaa
ctgatcgaagcactggatagcctgtttgcaggcgcatcgttttcaagccccgcacaggaa
gcgacggtatga
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