Halomonas sp. TD01: HPTD01_248
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Entry
HPTD01_248 CDS
T08977
Name
(GenBank) DEAD-box ATP-dependent RNA helicase DeaD (= CshA) (EC
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hbp
Halomonas sp. TD01
Pathway
hbp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPTD01_248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbp03019
]
HPTD01_248
03009 Ribosome biogenesis [BR:
hbp03009
]
HPTD01_248
Enzymes [BR:
hbp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPTD01_248
Messenger RNA biogenesis [BR:
hbp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPTD01_248
Ribosome biogenesis [BR:
hbp03009
]
Prokaryotic type
rRNA helicases
HPTD01_248
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CAH1041770
UniProt:
A0AA35GVQ4
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All DBs
Position
HaloTd01MainCirc:complement(255945..257657)
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AA seq
570 aa
AA seq
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MTSTSVASPSFGDLALLPAVLSAVEAQGYEIPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLELTRREPQVLVMAPTRELAQQVAASFSKYGQNLKGLEVAILCGGQEYRE
QLGALKRGAQVIVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPTEIERIVNRYLVNPVKVAIESRTTTGENIEQRIVRVDGGAKLEALA
RILEVEPVDGAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVSRITHVINYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREGRKV
GWMEQATGQKMTEMPLPDEAAIRAHRDEVFHHRVVAALTKGAEEQRALVERLVEEGHDAV
ELACAFAAMARADEAPIGRLQAPRKERAPRDSAPGGKPGGRRERSSAPSEGMIRYRVSVG
HKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPSTILAKMARARVAGRP
LEISEDSAPERAPRRRRDDGDAPVRRRERA
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcttcgccgagcttcggcgatcttgctctgttgcctgccgtt
ctctctgctgttgaagcacaaggctacgaaattccctcgccaatccaggcgcagacaatt
cctgcgttgctggaaggccgcgatatgctgggccaagcacaaactggtaccggtaaaacc
gctgcgtttgcattgccattgttatcgcgtttagaacttacccgtcgcgagcctcaagtg
ttggttatggctccgacccgtgaacttgctcagcaggttgcggcttcgttcagtaaatat
ggccaaaaccttaagggtcttgaagtggcgatcctttgtggcggccaagaataccgtgaa
caactaggtgcgctaaagcgcggtgcccaagtcattgttggcaccccaggccgtattatc
gatcaccttgatcgcggtagtttgaaactcgatggcctttcagcacttgtgctggatgag
gctgacgaaatgctgcgcatgggctttatcgacgacgtaaaacgcgtggttgccgatacc
ccaaaagatgctcagcgtgtgttcttctcggcaacgctgccgactgaaattgagcgcatt
gttaaccgctatttggttaatccggtgaaagtcgcgattgagtcgcgcacgaccaccggc
gaaaacattgagcagcgtattgtacgcgttgatggtggcgctaagcttgaagccctggca
cgtattctggaagttgagccagttgatggggccattgtctttgtgcgtacccgtgcggcc
tgtaccacgctggttgaacagttaacggctcgtggtgttaacgctgcaggtttgtcaggt
gatctggaccagagtcttcgtgaacgcaccattacacgtttgaagcgtggcaaagtcgat
gtgttgattgcgaccgacgtcgctgcacgcggtcttgacgtgtcgcgtattactcatgtt
attaactacgatctgccgcaagacgcagaagcctacacccaccgtatcggtcgtaccggt
cgtgcgggccgtagcggtatcgcgattactttcgctggtttccgtgaaggccgtaaagtg
ggctggatggagcaggcgaccggtcagaaaatgactgaaatgccgctgccagacgaagcg
gctattcgcgctcaccgtgatgaagtgttccaccatcgcgttgtggcggccttgaccaaa
ggtgctgaagagcaacgtgcattggttgagcgcttggtagaagaaggtcatgacgccgtt
gagctagcctgtgcttttgccgcgatggcgcgtgctgacgaagcgcctattggtcgcttg
caagcaccgcgtaaagaacgtgctccgcgtgatagcgctcctggtggtaagccaggtggc
cgtcgcgagcgttcaagcgcgcctagcgaaggaatgattcgttaccgtgtttctgttggc
cataaagatggcgttaagcctggtcaactggttggtgcactggcgaatgaaggcggcatc
gaaggcgcgcgtatcggtcgtatcgatattcgcaacgctttctcggtagttgagctaccc
agtggcctgccttccactattctggcgaaaatggcgcgtgcccgcgttgctggtcgcccg
ttagaaattagtgaagacagtgcacctgagcgtgctccacgtcgtcgtcgtgatgacggt
gatgcaccagttcgtcgccgcgaacgcgcttaa
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