Halomonas sp. TD01: HPTD01_2626
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Entry
HPTD01_2626 CDS
T08977
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
hbp
Halomonas sp. TD01
Pathway
hbp02020
Two-component system
hbp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hbp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HPTD01_2626
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPTD01_2626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbp03021
]
HPTD01_2626
Transcription machinery [BR:
hbp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPTD01_2626
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
FAA_hydrolase_N
Motif
Other DBs
NCBI-ProteinID:
CAH1044148
UniProt:
A0AA35E371
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All DBs
Position
HaloTd01MainCirc:complement(2857048..2858463)
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AA seq
471 aa
AA seq
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MVMKASLQLRIGTQLTMTPQLQQAIALLQLSTLDLRQEIQQALDANPMLEQEDEFGEQAV
SEPQEAEWSESIPSELSTDSDWSDTYQDIGSHGTSSEGPDFERQAAGQSLHGHLLWQLAM
TDFSPRDHAIAESLIDALDANGYLTQPLNDIREGLKAQGHEGLSQREVETTLLRLQQFEP
TGVFARDLRECLMLQLASLPEDTPLLMPAKRLVRQFLEALGKDDVRLLKRRLSLDDDQLD
DVIRLIRSLDPRPGSAFGDTDDSYVTPDLVVRHDNEGWHLELNPEALPRLRIQPDYASLI
KRADKSQDNQFLKEHLQEARWLIKSLSSRNDTLLRVGREIIARQIGFLEHGEEAMKPLIL
ADIADAVEMHESTISRVTTQKYIHTPRGVFELKYFFSSQVSGQDGGDSHSSTAIRARIKK
LVQDEPPGKPLSDSRLVSLLEEGGINVARRTVAKYRESMGIPSSSERRRLR
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggtcatgaaagcttctcttcaattgcgtatcggtacacagctgaccatgacacctcag
ctgcagcaggccattgccctgctacagctatcaacactggaccttcgtcaagaaattcag
caagcacttgatgccaatccaatgcttgaacaggaagatgagttcggcgaacaggccgtt
agtgaaccccaggaagctgagtggtccgaaagcattcctagcgaactctctactgacagt
gactggtcagacacttaccaagatataggcagccatggcaccagcagcgaggggcctgac
tttgagcgtcaagccgctggccaaagcttacatggtcacttactttggcaactcgccatg
acggacttctcacctcgcgaccatgccatcgctgaaagcctcatcgatgcgctggacgcc
aacggctatctgacccagcctctcaacgacattcgcgaaggacttaaagcccaaggacat
gaaggccttagccagcgtgaagttgaaacaaccctgcttcgtcttcaacagtttgagccc
accggcgtgtttgctcgcgacctgcgggaatgcttaatgctgcagctcgcttcactgcct
gaagatacaccgctgcttatgccagccaagcgtctagtacgtcaatttcttgaagcgctc
ggtaaagatgatgtgcgtttgttaaagcgacgcttaagcctggatgatgatcagctcgat
gacgtaatccgcttgatccgcagccttgatcctcggccaggaagcgcctttggcgataca
gatgacagctatgtgacaccagacttagtggtacgacacgataacgagggatggcacctg
gagctaaatccggaggcattgccacggctgcgcattcaacctgactacgcaagcctcatt
aaacgggctgacaagagccaagataaccagtttttaaaagagcatctccaggaagcacgc
tggcttatcaagagcctttcaagccgaaacgatacactactgcgggttggtcgagaaatc
atagctcgccagataggctttctggaacatggcgaagaagccatgaaaccgctgatatta
gccgatatcgcggacgctgtggaaatgcatgaatccactatttccagggtcaccacacag
aaatatatccataccccgcgcggggtattcgaactcaaatacttcttttcaagccaagtc
agtggccaggacggcggtgacagtcactccagcaccgccatccgggctcgaatcaaaaaa
ctggtgcaagatgaaccgcccgggaaacctctttcagacagccgcctcgtgtcgctattg
gaagagggtggcattaatgtggcaaggcgaacggtggccaaatatcgcgagtcaatgggt
ataccctcttcaagcgaacgccgccgtttacgctaa
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