Halomonas sp. TD01: HPTD01_2691
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Entry
HPTD01_2691 CDS
T08977
Name
(GenBank) Ribonuclease E (EC
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hbp
Halomonas sp. TD01
Pathway
hbp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPTD01_2691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbp03019
]
HPTD01_2691
03009 Ribosome biogenesis [BR:
hbp03009
]
HPTD01_2691
Enzymes [BR:
hbp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HPTD01_2691
Messenger RNA biogenesis [BR:
hbp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPTD01_2691
Ribosome biogenesis [BR:
hbp03009
]
Prokaryotic type
rRNA processing factors
HPTD01_2691
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAH1044213
UniProt:
A0AA35E370
LinkDB
All DBs
Position
HaloTd01MainCirc:complement(2919623..2923036)
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AA seq
1137 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GAERHGFLPLKEISREYFIKDVSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGDDRSQLKDAMGQLTVPDKMGLIVRTAGIGRSPEELQW
DLDYLVQVWESITTEAGKRSAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALG
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRSVLADIESRQGVRVVLLPNPEMDTPHY
DVQRLRDDHLDDDESLTLSSFELSTDTEVGKEPDPSFTPPAMRAEAAVKSVVHNAPAPAS
LQTEEKAEKVAKADKVVAATTPVAEEQPSVIGRFIRGFAKLLGGEDTSTSQPEQETPVAR
KQSEKTSSNRTRSESKPKPARERGESASKNEQRNNQQSSNQQPNNPQPSQPRNADNNDDA
NDKRSGPSRTRNRRRHPQQDDAKAQDSDQKSNRQKEQQTNQAAKESPKDEPAKPAAQPEN
RRDKPRDAKPKNEDTREPASQTDDSKQDDGKPKRTRNNPRNRTRKQAVNPQAEAEQLKLQ
AEAAEAPAVDATAVEAPAVEVPSNETAPASASLQDEASTTVATATETPDQAAEETATADG
TTAERPAEKAEKARKATRQRRQPQQAVDKAEAETRVENSVESKPQQTMNDAAAAKEAPQE
ATSRSSEVASAETPSTDAEVKPQEKSTSDTKELDTAYSESMSSRGEETAEETDKLHESAL
QEPVTQESAAQEPVSQEPHEAEQATSVSAGTHTEAPKPAETAETAETAETAETVDSDANN
IQAPPKNLVASIESSSPESAEQPEAPTASNDAVSDTVSETANSTAAAQESEEPQPTLATD
EKTQTPLAESIVETETVTPEAAPAASAQDETPKPRRRRRAHNDPRELRKQAQNTHNE
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctgattaacgcgacccagccagaagagcttcgggttgcgctggtagac
gggcaacgcctttacgatttagacatcgaatctggcgctcgagagcagaagaaagccaat
atttaccggggcaaaatcacccgagtagaaccttcccttgaagccgcttttgttgatttt
ggtgccgaacgccatggctttctgccgctaaaagaaatttctcgcgaatattttatcaaa
gatgtttctggccgccccagcatcaaagaagtgctgaaagaaggccaggaagtcattgtc
caagttgataaagaagagcgaggcaataaaggggccgcactgactacctttattagctta
gcgggtcgctttcttgttctgatgccgaacaacccccgtgcgggcggcatttcacgccgc
attgagggtgatgatcgcagccaactgaaagacgccatgggccaactgacagtaccggac
aaaatgggcctgatcgttcgcaccgccggtatcggccgtagcccagaagagctgcagtgg
gacctggattaccttgtccaagtgtgggaatccatcaccactgaagcaggcaaacgttca
gctcctttcctgatttatcgcgaatctaatgtcattatccgcgccatgcgcgattaccta
cgccaagatattggcgaggtgctaattgatagcccagagattcatgcagaagcactgggc
tttattcgtcaggtaatgccttcttaccagcagaaaattaaactttacgcggatgaagtt
ccgcttttctcgcgcttccaaattgagtcgcaaatcgaaactgcttaccagcgcgaagta
aaacttccctctggtggctctattgttatcgatcacaccgaagcgctggtctctattgat
attaactctgcccgggctacacgtggcagcgatattgaagaaaccgcactacagaccaac
tctgaagcagccgatgaaattgctcgacagctgcgtctgcgtgatatcggtggcctcgta
gttatcgactttatcgatatgggccctgcgcgcaatcagcgtgaggttgaaaaccgcatg
cgcgatgcactgaagctggatcgggcgcgcgttcagattggccgaatttcacgctttggc
ttaatggaaatgtcacgccagcggctgcgcccctcattaggcgaaaccagcggcgttgtt
tgtccgcgctgtaacggacaaggcaccattcgcgatgttcgctcgctttcactctctatc
atgcgcctgattgaagaagaagccatgaaagagcgtagcgcacaaatccgcgccattctt
cccgttccggtggctacctacctgttgaatgaaaagcgtagcgttctggcagacatcgaa
tcacgccaaggcgtgcgtgtggttctcttaccgaatcccgaaatggatacgccgcattac
gacgtccagcgactgcgtgatgaccacctagatgatgatgaaagcctgacattatccagc
ttcgagctttctactgatactgaggtaggcaaagaacccgacccaagcttcaccccacca
gccatgcgcgctgaagcagcggttaaaagcgttgtacataatgcgccagctcccgcctct
cttcagactgaagaaaaggcagagaaagtagcaaaagcagataaagtcgttgccgcgacg
acacccgttgctgaagagcaacccagtgtgattggccgctttatcagaggctttgctaaa
ctactagggggtgaagataccagcacgagtcagcccgaacaggaaacccctgttgcccgt
aagcagtctgaaaagactagcagcaatcgcacgcgcagcgaaagcaaaccaaagcctgcc
cgtgagcgtggcgaaagcgccagcaaaaacgaacagcgcaataatcaacaatcgagcaat
caacagccgaataatccgcagcccagccaaccgcgcaacgctgataataacgacgacgct
aacgataaacgcagcggccctagccgtactcgcaatcgtcgacgccatcctcagcaggat
gatgccaaggcccaggacagcgaccagaagagcaatcgtcaaaaagagcagcaaacaaac
caagcggctaaagaatcacctaaagacgagccagctaaacccgctgcccagccagaaaac
cgtcgcgataaaccgcgtgatgcaaagccgaaaaacgaagatacccgcgagcccgcatca
caaacggatgacagcaagcaagatgatggcaagccaaagcgcacgcgcaacaatccgcgc
aatcgcacgcgcaaacaagctgttaatccccaggctgaagcggaacagctaaaactgcaa
gccgaagcggctgaagcacccgccgttgatgcaactgctgttgaagcgcctgctgttgaa
gtacccagtaatgaaacagcacctgctagcgcctctttgcaggatgaagccagcacaact
gttgcaacagcgactgagacgcctgaccaagctgcagaggaaacagcaactgccgatgga
acaacggctgagcgccctgccgaaaaggcggagaaagcacggaaagccacgcgtcagcgt
cgccaacctcagcaagcggtagacaaagctgaagccgagacacgtgtagagaatagtgtt
gaaagcaaacctcagcagacaatgaacgacgcagccgctgctaaagaagcgccccaggaa
gcgaccagccgttcgtctgaagtcgcgagtgctgagactccttcaactgacgcggaagta
aagccacaggaaaagagtacttcagacacgaaagagctagataccgcctacagcgaatca
atgagctcacgtggcgaagaaaccgcagaggagactgacaagctccatgaatctgcgctt
caagaacctgtgacccaagaatctgcggcccaagaaccggtgtctcaagaacctcacgag
gcagagcaagcgacatcagtatccgccggcacgcacacagaagcgccgaaacctgctgag
actgctgagactgctgagactgctgagactgctgagactgtcgacagtgatgctaacaac
attcaggcgccaccgaaaaacctagtggctagcattgaatcaagctcaccagagtctgct
gaacagccagaagcacctacggcaagcaacgacgcggtgagcgatacagtttcagaaaca
gctaacagcaccgcggctgctcaagaaagcgaagagccacagcctacgttggcgaccgat
gagaagactcaaacacctttagcagagtccattgttgagactgaaacagtgacacctgaa
gcggcgcccgctgcttctgcccaagacgagacgcccaagccgcgccgccgtcgtcgcgct
cataacgatcctcgtgaactgcgcaaacaagcacagaacacgcataacgagtaa
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