Halomonas sp. TD01: HPTD01_2952
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Entry
HPTD01_2952 CDS
T08977
Name
(GenBank) hypothetical protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hbp
Halomonas sp. TD01
Pathway
hbp03030
DNA replication
hbp03430
Mismatch repair
hbp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPTD01_2952
03430 Mismatch repair
HPTD01_2952
03440 Homologous recombination
HPTD01_2952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hbp03032
]
HPTD01_2952
03400 DNA repair and recombination proteins [BR:
hbp03400
]
HPTD01_2952
Enzymes [BR:
hbp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HPTD01_2952
DNA replication proteins [BR:
hbp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HPTD01_2952
DNA repair and recombination proteins [BR:
hbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HPTD01_2952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
PAS_4
Rv2179c-like
PAS
Motif
Other DBs
NCBI-ProteinID:
CAH1044474
LinkDB
All DBs
Position
HaloTd01MainCirc:complement(3207189..3209249)
Genome browser
AA seq
686 aa
AA seq
DB search
MTRDGLPKRQRLIGLWLLLSGISLLGGAIFAAWLDAQLSPTGPTRVALWLGSFSGGATIF
LVGLLLERMLFTPLRHLQVQLARLVANPDARDEHPPEGWLKGLGPDLRRVRESWRIDRNQ
LATAHADGARSAAKIRRELETLLQVLETPLLLCDHHRRLMLFNQAAEDFFVDNTALGLGK
RLEALLPVASLQQALSQLPADGSPRELLAPCDNRWLKVVLRRVPGSDGETLLTFSDATAS
WSNEMGVRAELATKLPLLRQHTASLTSAADALIQLRHNGAENPSLRQRFEQVIQEEGATL
GNNVGQIGQLLDDLQHQGERLTPMWSNDFWQALDERLDPAHRLITPVGMPAWFKGDAPAL
IVLFDSLVKHLNSHLPVSHFEGEICLGNKRVYLDLIWQGSPLPEHELAKWRRQPLPSLPL
NPLVSDVLRQHASDIWSLADDDGLHARLRLPLPAMERVGAPREIAPPRPEFHDFGIADLP
PPDEALANRTLRSLEVVAFDTETTGLELRRGDTVISLGACRVVNARLLASEVFDQKVDPK
RPIPLNSTAIHGLTDADVAGAPPLDIVLTRFRDYVGDAVLLAHNAAFDMLAITNKGVVFD
LPVVDTLLISRALDEALDGHDLDTLAQRYDLTFPPGTRHTALGDARVTAELWLALLPRLE
ARGVDTLEQLLALQANAFDRQDASAS
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgacccgtgacgggctccctaaacgtcagcgactcattggcctatggctgctgctaagt
ggtatcagcttgctcgggggcgctatttttgctgcatggctggatgcgcagctttcaccc
acaggccctacccgagtagcactttggctgggtagtttttccggcggtgcgacgatattt
ttagttggcctgctactagaacgtatgctgtttactcccctgcgccatttacaggttcag
cttgccagactagtggcaaacccagacgcccgtgatgaacacccgcccgaaggctggctg
aaagggcttggtcctgacctgcgaagagtgcgcgagagttggcgcattgaccgcaatcaa
ttagccacggctcatgcagatggcgcacgtagcgcggcaaaaattcgccgcgaattagaa
acgctgctgcaagtactcgaaacccccttattactatgtgaccaccaccgccgtctgatg
ctattcaatcaagccgcggaagatttctttgtcgataatacagcgctgggcctaggcaaa
cgcttagaagcgctgctgcccgttgccagcctgcaacaagctcttagccaactgccggcg
gatggttcgcctcgagaactacttgccccctgtgataaccgctggctaaaggttgtgcta
cgccgagttcctggcagtgatggtgaaacactattaacgtttagcgatgcaaccgcgtcc
tggtcaaatgaaatgggtgttagggcggaactcgccaccaagctccccctattacgccaa
catacggcaagtctgaccagtgcggcggatgcactgatacagctgcgccataacggcgca
gagaacccatcgttacgtcagcggttcgagcaggtgattcaagaagaaggtgccacccta
ggcaataatgttggccaaatcgggcagctattggatgatttgcaacatcaaggcgagcgc
ttaacccccatgtggtcgaatgacttctggcaagccttggatgaacgcttagatccagcg
catcggctaataacccccgttggtatgcccgcttggtttaaaggcgatgcaccagcactg
attgttctttttgattccttagtcaagcatcttaactcccaccttccggttagccatttt
gaaggtgaaatatgccttggcaacaaacgtgtttatctggatttaatttggcaaggcagc
cccttaccagagcatgagttagcgaaatggcggcgccagcccctgccgtcgctaccgctc
aacccgctggtgtctgacgtgctacgccagcacgcaagcgatatttggagcctcgcggat
gatgatggccttcatgcgcgccttcgcctgccgctaccggcgatggaacgcgttggggcg
cctcgagaaatagcgcctccgcgtccagagtttcatgatttcggcattgccgacctgcct
ccgccagatgaagcattggctaatcgcacgttacgtagcctagaagtggttgcgtttgat
actgaaaccaccggccttgagcttcgccgaggggatacagtgattagcctaggggcttgc
cgggttgtcaatgcgcgcctgttagccagcgaagtctttgatcaaaaagtggacccaaaa
cgcccaatcccccttaacagtacagcgatacacggattgacagatgctgatgtagccgga
gcaccgccgctcgacattgtcctaacgcgctttcgagactacgttggtgatgctgttctg
ttagcgcataatgctgcgtttgatatgcttgccattaccaacaaaggcgttgtgtttgac
ctgcctgtcgtcgataccctattgatttcaagagctttagacgaagcattagatggacat
gatttagatacgctggctcaacgatacgatctaacttttccacctggcactcgccacacg
gcgcttggggacgcccgagtaacggctgaattatggctagcgctgttacctcggcttgaa
gcacgtggcgtggacacgttagagcagctgttggcgctgcaggccaatgcgtttgatcgc
caagatgctagcgcctcatga
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