Halomonas sp. TD01: HPTD01_3274
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Entry
HPTD01_3274 CDS
T08977
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
hbp
Halomonas sp. TD01
Brite
KEGG Orthology (KO) [BR:
hbp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbp03019
]
HPTD01_3274
Enzymes [BR:
hbp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HPTD01_3274
Messenger RNA biogenesis [BR:
hbp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HPTD01_3274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
ResIII
Flavi_DEAD
HA2_N
DinB_2
nSTAND3
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
CAH1044796
UniProt:
A0AA35E499
LinkDB
All DBs
Position
HaloTd01MainCirc:complement(3506376..3508826)
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AA seq
816 aa
AA seq
DB search
MPIQAMSTLPIEQHLTAIQVALDVHNRLILVAQPGAGKTTRVPLTLLNSQWAKGQKVLLL
EPRRVAARLAASFMAAQLGEPIGKTVGYRMRGDSKVGPYTRLEVVTQGVLTRMLQDDPLL
DGVAAIIFDEFHERSIEADLGLALSLDIQQSIRADLRLIVMSATLDVAALTSILGNDTLV
IESTGREFPIETYYRPFSSDDALDVAAYRVVNEALANVNSHDVLVILPGVAEITRLVKTL
ENSALDIEVRALHGGMPIEEQQAALAPHETRQRVIVSTAIAESSVTVDGVNVVIDAGLER
VPLFQPRTGLTRLTTRRVNRASADQRRGRAGRQQPGICYRLWSREQPLVAYGEPEIAQAD
LSRLALEIAMWGARSPDELVWMTPPPNGAWQSSQALLRQLGILDSAGLLTPLGKQSARWP
LEPRLAVMLSKAASLKAVQLACALAALLEGRERVSGSLRDALAQRFIQPSRFPQWQRETK
RLTDMANLLVTHKMSLEPLSCLLAMAYPDRIGQLISPGRFKLANGKTATLSNNHPLANTP
YLVAVSVESATSEATIYQAEPITLAALINIYPATQHWEDRITWSDTQGKLLGEAVQRHGE
LVLASRPLAELSVEAVQQALLQALKQRSTALFNGKVKQLQGRMALLASAYPDVWPDWSEC
ALLESSDKWLAPYMAGMTRFSQLEKMPFHTYLMATLSWDERSRFERLTPPTITAPSGNQA
SIDYAPCLIGRPPVLALKLQEAFGWQDTPVVADGHMPVVVHLLSPAKRPLQVTQDLRSFW
LNGYPEVRKEMRGRYPKHPWPEDPLTAQATAFTKRR
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgcctatacaagcgatgtctacgcttccaatcgaacagcatctaacagcgatccaggtc
gctctagatgttcataaccgccttatcttagtcgcccagcctggggcaggtaagacaacc
cgcgttcccttgaccttgcttaacagtcaatgggcgaaagggcagaaagtattgttgctg
gagccgcgacgtgttgcggcgcggttggcggcaagctttatggctgcacagcttggcgag
cctattggcaagacggttggctatcgtatgcggggggatagcaaagtaggcccatatact
cgcttggaagtggttactcagggtgttctgacgcgtatgttgcaagatgatccgttactt
gacggggtcgctgctatcatcttcgatgagtttcatgagcgcagcatagaagcagatctt
gggctggcgctatcgctggatatccaacaaagcattcgtgctgacttacgattgattgtg
atgtctgcgacgttagatgtcgccgcgttaacaagcattttgggcaacgatacactagtg
attgaaagcacgggtcgtgaattcccaattgaaacgtactatcgcccttttagcagtgat
gacgcgttagacgttgctgcttaccgagtggtaaatgaggccttggcgaatgttaatagc
catgatgtgctggtgattttgcctggagtggcagaaataactcggttggtgaaaacgctg
gaaaatagcgcccttgatattgaggtgcgggcattacatggcgggatgcccattgaggaa
cagcaagctgcattggcacctcacgaaactcgccagcgcgtgattgtatctactgccatt
gctgaatccagcgtgacagttgatggtgttaatgtggttattgacgctggcttggaacgt
gtaccgctatttcagccgcgaacgggtcttactcggttaactacccgacgtgtcaatcgt
gccagcgctgatcaacgccgcggtcgtgcagggcggcaacaaccaggaatatgttatcga
ttatggtctcgggagcagccacttgttgcctacggtgaacctgagatagcgcaagctgat
ttatcaagactagcgcttgaaattgccatgtggggagcgcgttcgccagatgagctagtc
tggatgacaccaccacctaacggagcatggcaaagtagccaggctttgcttcgtcaactt
ggtatacttgattcagcgggcctgctaacgccgctaggtaagcaaagtgcgcgttggccg
cttgagcctcgtttagcggtaatgctatcaaaagcggcgtcactcaaggcagtacaacta
gcctgcgctttagccgctttgctggagggtagggagcgtgtcagtggttcgctgagagat
gcgttggctcagcgatttattcaaccctcgcgatttcctcaatggcagcgagaaaccaag
cggcttacagatatggctaacctgctggtgacacataagatgtcgctcgagccgcttagt
tgtctgctagctatggcttaccctgaccgcattggtcaacttatcagcccaggtcgcttc
aaactcgctaatggtaaaacagccacgctgtctaataatcatccgctagcaaatactcca
tatcttgttgcggttagcgttgaaagtgccaccagcgaggcgacaatatatcaagccgag
ccaatcacgttggcagcgctcatcaacatatatccggctacccagcattgggaagatcgt
attacgtggtctgatacccaaggtaagcttctcggagaagctgttcaacgtcacggtgag
cttgtattggcaagtaggcctttagcggagctatctgtagaggctgtccaacaggcgtta
ctccaggcgttaaaacaacgatctacggcgctttttaatggcaaagttaagcagttacaa
gggcgaatggcgctgttggcgagtgcttatcctgacgtatggcctgattggtcagagtgt
gcgttgttagagagttctgacaagtggctggcaccctatatggcgggtatgacacgtttc
agccaactagaaaaaatgccgtttcatacctacttaatggcaacgctaagctgggatgag
cggtcccggtttgagcgtttaacgccaccaacaataacggctcctagcggtaatcaagca
tcaattgattatgcgccctgtctaataggaagaccgccagtacttgctctaaaattacag
gaagcgtttggctggcaagatacccctgtcgtcgcggacggccatatgcccgtcgtcgtt
catcttctttcaccggcaaagaggccgcttcaggttacccaagatttgcgcagtttttgg
ttaaatggctacccagaggtgcgtaaagagatgcgtggtcgctacccgaagcacccctgg
ccagaagatccacttaccgctcaagcaacggcattcactaaacgtcgataa
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