Halomonas sp. TD01: HPTD01_3417
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Entry
HPTD01_3417 CDS
T08977
Name
(GenBank) DNA topoisomerase I (EC
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hbp
Halomonas sp. TD01
Brite
KEGG Orthology (KO) [BR:
hbp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hbp03032
]
HPTD01_3417
03400 DNA repair and recombination proteins [BR:
hbp03400
]
HPTD01_3417
Enzymes [BR:
hbp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HPTD01_3417
DNA replication proteins [BR:
hbp03032
]
Prokaryotic type
DNA Topoisomerases
HPTD01_3417
DNA repair and recombination proteins [BR:
hbp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HPTD01_3417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
CAH1044939
UniProt:
A0AA35GYV5
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Position
HaloTd01MainCirc:complement(3661186..3663813)
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AA seq
875 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNDFIVKSSVGHIRDLPTSGSGKAASDPKERARQAAATR
KMSAEEKAEYKKRKTHDQLIRRMGIDPSNGWEARYEVLPGKEKVVAELKKLAEKADAVYL
ATDLDREGEAIAWHLRETIGGDDSRYKRVVFNEITKNAIQDAFKSPGTLNIPRVEAQQAR
RFLDRVVGFMLSPLLWAKIARGLSAGRVQSVAVRLIVEREREIRAFIPEEFWDVHADLAS
PDGELVRFALVRQDGKPFRPTSEKDTLARIEQLRKAKLAITSREDKPTSSKPTAPFITST
LQQAASGRLGFSVKKTMTMAQRLYEAGYITYMRTDSTNLSKDAVESVRSFIGDEYGARYL
PESANRYSSKESAQEAHEAIRPSSVERKASDLSGMERDAERLYELIWRQFVACQMTPAEY
LSSTLSVEVDGYDLRAKGRVLKFDGYTRVMKPTGKNEDQSLPDLPKGTAMALEKLDPQQH
FTKPAPRYTEASLVKELEKQGIGRPSTYASIISTIQDRGYVKLESRRFYAEKLGDIVTER
LKESFPDLMDYSFTARMEDSLDEVAEGERNWQALLDAFYGEFSQELSKAESDEGMRPNQP
VPTDIDCPSCGRKMQIRTASTGVFLGCSGYNLPPKERCKTTIDLIPGEEAVAEDAGEEAE
TNALRAKRRCQKCGTAMDNYLIDEGRKLHICGNSPDCDGYEVETGKFKIKGYDGPIIECD
KCGSEMQLKSGRFGKYFGCTNSECKNTRKLLRSGDVAPPKMDPIPMPELACQKVDDHYVL
RDGASGLFLAASKFPKNRETRPPLVKELKAHADELPEKYHFILKAPSEDPDGRPAQIRYS
RKNKEQYVMTDEEGKATGWKATFEAGKWHVEDKRK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagtcactggtcatcgtcgagtcgcctgcgaaagcgaagacgatcaataagtat
ctcggcaacgatttcatcgtaaagtcgagcgtgggtcacatccgtgacctgccgaccagc
ggctcaggtaaggcagcctccgacccgaaggagcgcgctcgccaggctgcggcaacacgc
aagatgtcggcggaagagaaggcagagtacaaaaaacgtaagacccatgatcagttaatt
aggcggatggggattgacccaagtaatggttgggaagcccgctatgaagtgctcccaggt
aaagaaaaagtcgtcgcagaattaaagaagctggctgaaaaagccgatgctgtttatctc
gcaacggatttggatcgcgaaggggaggcgattgcctggcatttgcgcgagacgattggt
ggcgatgacagtcgctacaagcgcgttgtatttaatgaaatcaccaaaaatgccattcag
gatgcgttcaaatcgccagggacgctaaatattcctcgcgtggaagcacagcaagcgcgc
cgttttttggatcgcgttgtcggttttatgctttccccattgctgtgggccaagattgcc
agaggcttatcagctggccgtgtccaatcggttgcggttcgactaatcgttgagcgtgag
cgagagattcgtgcgtttatccctgaagagttttgggatgtgcatgcagatctcgcttct
ccggatggcgagctagttaggtttgcgctggtgcgtcaggatggtaaacctttccgcccc
acctccgaaaaagacacgcttgcgcgtattgagcaactacgtaaagccaagcttgcgatt
acctcccgtgaagacaagccgacgagctccaagcctactgcaccgtttattacctcaacg
ttgcagcaggccgccagcggccggttagggttctctgttaagaaaaccatgaccatggcc
cagcgcctctacgaggctggctatattacttacatgcgtaccgactccaccaatctttca
aaggatgcggtagagagtgttcgttcgtttatcggtgatgagtacggcgcacgctatttg
ccagagtctgctaaccgttacagcagtaaagagagtgcccaagaagcccatgaggccatt
aggccctctagcgttgagcgcaaagcgagtgatctctctggcatggagcgagatgcagaa
cgcctctacgagctgatttggcgtcaatttgtcgcctgtcagatgacacctgctgagtat
ctttctagtacgttgagtgttgaagttgatggctacgacttgcgtgccaaagggcgagtg
ctcaagtttgatggttacacgcgggtgatgaagccaaccggcaaaaatgaagaccaaagc
ctgcctgatttgccgaagggcacggcgatggcgcttgagaagcttgatcctcaacagcac
ttcactaaacctgccccgcgttacacggaagccagcttagttaaagagcttgagaagcaa
ggcattggtcgtccttctacctatgcttccattatttccacgattcaggatcgtggttat
gtgaagttagaaagtcgtcgtttctatgctgaaaaattgggtgatattgtcaccgagcga
ttgaaagagtctttccccgatttgatggattattcgttcacggctcgaatggaagatagc
ctggatgaagttgcggaaggtgagcgcaactggcaagccctgttggatgctttctacggt
gagttcagccaagagcttagcaaagcggaaagcgatgaaggaatgcgccctaaccagccg
gttcctacggatattgactgcccaagctgcggccgcaaaatgcagattcggacagcctcc
accggggtgtttttgggctgcagcggttataacttgccgcccaaagagcgttgcaaaacc
accattgatttaattcctggtgaagaagccgtcgcagaagacgcaggcgaagaagcagaa
acgaatgctctgcgtgccaagcgacgttgccagaagtgtggaaccgccatggataactat
ctcatcgatgaggggcgcaaactgcatatttgcggtaatagtcctgattgtgatggttat
gaagtggagacgggtaagttcaaaatcaaaggctacgacggccccattatcgaatgcgat
aaatgtggttctgagatgcagcttaagtcgggtcgatttggtaagtatttcggctgtacc
aacagtgagtgtaaaaatacccgcaagttgcttcgtagtggtgatgtggcgccgcccaaa
atggaccccattcccatgccggaactggcctgccaaaaggtagacgaccactacgtgctg
cgtgatggtgctagcggcttattccttgccgccagcaagtttcctaaaaaccgtgaaacc
cgtccgccgctggtaaaagagctgaaagctcacgctgatgagctgccggaaaagtatcac
tttatcctgaaggcgcccagcgaagacccagatggccgtcctgcgcaaatccgttattca
cgaaaaaataaagagcagtacgtgatgaccgatgaggagggcaaagcaactggctggaaa
gcaactttcgaagcagggaaatggcacgtggaggataaacgtaagtga
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