Halomonas sp. TD01: HPTD01_649
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Entry
HPTD01_649 CDS
T08977
Name
(GenBank) Formamidopyrimidine-DNA glycosylase (EC
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
hbp
Halomonas sp. TD01
Pathway
hbp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HPTD01_649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbp03400
]
HPTD01_649
Enzymes [BR:
hbp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
HPTD01_649
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
HPTD01_649
DNA repair and recombination proteins [BR:
hbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HPTD01_649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
CAH1042171
UniProt:
A0AA35DZA2
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All DBs
Position
HaloTd01MainCirc:complement(681510..682337)
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AA seq
275 aa
AA seq
DB search
MPELPEVETTRRGIAPYLEGQEITEVLVRQSRLRVPVPGNLAERLVGAHVGVLNRRAKYL
QIPVSTPEGEATLLWHLGMSGSLRIAKVGDLPKKHDHVDVVMASGYVLRYHDPRRFGFVD
WQQGDGRLDSRLAHLGPEPLDDAFNGRWLYNASRKKRVAVKPFLMDNRVVVGAGNIYAAE
ALFMACIDPRRAAGKISLARYQQLAAAVKEVLAAAITQGGTTLRDFVSGQGEPGYFAQQL
NVYGRHGQPCLRCGVELRRITLGQRASVFCPGCQR
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgcctgaagttgaaacgacacggcgtggcattgccccctatttagaaggg
caggagatcaccgaggtgctggtgcgtcagtcccggttacgcgtgccagtacctggaaac
ctagccgaacggctggtaggtgctcatgtaggcgtgttaaatcgccgcgctaagtatctg
caaattcccgtgtcgacgcctgaaggtgaggccacgctgctatggcatttgggcatgtcg
ggcagcctgcgcattgccaaggtgggggatttgcctaaaaagcatgatcatgttgacgtg
gtgatggccagtggctatgtgctgaggtaccacgacccgcggcgttttggttttgttgac
tggcagcagggcgatggccgcttagactcacgccttgcgcaccttggtcctgagccgttg
gacgacgcgtttaacggccgctggctctataacgcatcgcgtaaaaagcgcgttgcggta
aagccttttttaatggataaccgtgtggtggtcggtgcgggtaatatttacgctgccgaa
gcgctgtttatggcgtgtatcgacccccgtcgcgccgctgggaaaatttccctggcccgt
taccagcagctagctgccgcggttaaagaggttctggcggcagcgattacccagggtggc
accacactgcgagattttgtcagtggtcagggtgaacccggttacttcgcccagcaactg
aatgtgtacgggcgccatgggcagccttgcctgcgctgtggcgttgagctgcgtcgtatc
accctgggtcagcgggccagcgtgttttgcccgggttgccagcgatag
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