Halomonas sp. TD01: HPTD01_688
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Entry
HPTD01_688 CDS
T08977
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hbp
Halomonas sp. TD01
Pathway
hbp03410
Base excision repair
hbp03430
Mismatch repair
hbp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HPTD01_688
03430 Mismatch repair
HPTD01_688
03440 Homologous recombination
HPTD01_688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbp03400
]
HPTD01_688
DNA repair and recombination proteins [BR:
hbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HPTD01_688
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HPTD01_688
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HPTD01_688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
CIDE-N
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
CAH1042210
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Position
HaloTd01MainCirc:complement(719711..721507)
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AA seq
598 aa
AA seq
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MADELTLTQNANQPRLEPRPLDEAVYARAQAEGLSELQARLLASRLPGYTGELVPLIAPS
LRYLAHPEKLADGRRAAERIAQAVAEGESIGILTDYDVDGITSHVVIRRTLVELFGVPEH
KLHSLIGHRIHDGYGISLPLVERALGLKPLPSLVITADCGSSDEPRIARLKAAGIDVVVS
DHHALPLEGPPSSAYACVNPTRSDCDYPDKTIAGCMVAWLLMSLARGVLIEWGALPDATP
KLSPWLSYVALGTVADCVSLGGSPANRAVVNYGLTLINRMDAACWRAMAARLGADSVPFN
AETLAFQMGPRINARSRLDDPYAALHFMLAESDSVANRQLEVLDQDNQSRKAIEADMAEE
ARALAVSTLEANEPAVVVLLEDGHPGVQGIVASRLVQAYGRPALVLTRAAAPNMLTGSGR
SIDGLHLRDALQRTFELAPEALPRFGGHSGAAGVGVPREQLAAFKTAFLQAVGEQLGDTP
LYPRLWTDGELSTSQLSLLTLSEVEALGPYGREFDPPLFEGRFIVEALRPVGAEGSHLMM
ELSMGAVTSKAIWFRALTPGELPSFSVGDTLHCAYKLNRNRWRGRESLQLMVEHASPV
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgaactaacactcacgcaaaatgccaaccaaccacgcttagagcctcgtcca
ctggacgaggctgtctacgcacgtgcccaagcggaaggtttaagcgagctacaagcgcgg
ctattggcttcacgcctgccgggctacacgggcgagctcgttccgctgattgcgccgagc
ctgcgttacttggcgcatccagaaaagttagccgacggccgccgtgccgctgaacgtatt
gctcaggcagtggcagaaggtgaatctatcggcattctcaccgattacgacgtggacggt
attacctcccacgtggtgattcggcgcacgttggtggagctgtttggcgtacccgaacac
aagttacatagtttgattggccaccgtatccacgatggctatggcattagtctgccgcta
gtggagcgcgcacttggtttaaaaccgctgccctcgctggtgattaccgctgactgtggt
agttcagatgagccgcgtattgcacggttgaaagccgctggtattgatgtagtcgtcagc
gaccaccacgcgctgccgctggaaggcccaccgtcttctgcctatgcctgcgttaacccg
acacgcagtgattgtgactatcccgataaaacgatcgctgggtgcatggtggcatggctt
ttgatgtcgcttgcccgtggcgtgttgattgaatggggggcattgcctgacgcaactcct
aagctgtcgccatggctttcttacgtcgcgctgggcaccgtagcggactgtgtttcgctg
ggcggtagtccggctaaccgcgcagtagttaactacggattaacgctgatcaaccgtatg
gatgctgcctgttggcgcgccatggcggcgcggcttggggcagatagtgtgccatttaac
gctgaaacgctggcgttccaaatggggccacgaattaacgctcgctcacggctggatgac
ccctatgcggcgttacactttatgctcgcggaaagcgatagtgtcgccaatcgtcagcta
gaagtgcttgaccaagacaaccagtcccgcaaggcgattgaggcggacatggcggaagaa
gcgcgtgcacttgctgtgtctacgctggaagctaatgagccggcggtggtggtactgctg
gaagatggccaccctggtgtgcaggggattgtcgcttcgcggctagtccaggcctatggt
cgccccgcgttggtgctgacccgcgcggcggcgcccaatatgttgaccggttctggccgc
tcgattgatggcctgcacctgagagatgcgttgcaacgcacctttgagctagcacccgag
gcgctaccgcgctttggcggccatagtggggcggcgggtgtcggcgtaccaagagaacag
ttagcggcctttaaaactgcttttttacaggccgttggtgagcaactgggcgatacaccg
ctttatccgcggctatggacagatggcgagctctctacgtcgcagctatctctgttaacg
ctaagcgaagttgaagcgcttggcccttacgggcgtgagtttgacccgccactatttgaa
gggcgctttattgttgaagcactacgcccagtaggtgctgaaggttctcacctgatgatg
gaactttccatgggcgcggtgactagcaaagcgatttggttccgggcgttaacgccaggg
gagctcccctcatttagcgtgggcgacacgctgcactgcgcctataagctcaatcgcaac
cgctggcgaggacgagagtcattgcagttgatggtagaacacgccagccctgtctaa
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