Halotia branconii: QI031_00625
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Entry
QI031_00625 CDS
T09011
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hbq
Halotia branconii
Pathway
hbq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QI031_00625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbq03019
]
QI031_00625
03009 Ribosome biogenesis [BR:
hbq03009
]
QI031_00625
Enzymes [BR:
hbq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QI031_00625
Messenger RNA biogenesis [BR:
hbq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QI031_00625
Ribosome biogenesis [BR:
hbq03009
]
Prokaryotic type
rRNA helicases
QI031_00625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WGV26058
UniProt:
A0AAJ6NTD8
LinkDB
All DBs
Position
123212..124723
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AA seq
503 aa
AA seq
DB search
MNLSFPELGISQERVELLETIGFTAPTNIQAQAIPQLLAGRDVVGQSQTGTGKTAAFTLP
ILERLDVNQRAVQALVLTPTRELAIQVHDAVAQFMGNDGLRVLAIYGGQSIDRQMSQLKR
GVHMVVGTPGRMIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPTDRQTA
LFSATMPPSIRMLVNKFLRSPAIVTVEQPKAAPNKINQVAYLIPRHWTKAKALQPILEME
DPETALIFVRTRRTAAELTNQLQAAGHSVDEYHGDLSQQARERLLGRFRNRQVRWVVATD
IAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAFERH
NRQSWQLLSIPTRAQIEARHINKLQEQVGEALTGERLASFLPIVSELIEKYDAHAIAAAA
LQIAYDETRPAWLQSGVDPQEDNVPVPKPKLNKRRDSSGERSRSSWTKSDSNGGEEERRG
TPKPKLRTTHREPSVSPNSKKLG
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttcgtttccagaattaggcatttcacaagaacgtgtagagttattagaaaca
atcggctttaccgcacctactaatattcaagcccaagctattccccaattgttagcaggt
cgagatgtagtcggtcaatcccaaacaggaacaggtaaaacagcagcatttaccctgcca
attttagaacggttagatgttaaccaaagagcagtacaagcgttggtcttgaccccaact
cgtgagttagcaattcaagttcacgatgccgttgctcagttcatgggtaacgatggattg
cgagtgctagcaatttatggtggacaatcgattgaccgccaaatgtcacaactcaaacgt
ggcgttcacatggttgtgggtactccaggacggatgatagatttactagaccggggctgt
ctcaagctcgatcaagtgaaatggtttgtcttagatgaagccgatgaaatgttgagcatg
ggttttatcgatgatgtgattaagattctttctcaagcacctacagatcgccaaacagct
ttgttctcagccaccatgccgccatcgattcgcatgttggtgaacaaatttttgcgatcg
cctgcgatagtcaccgtcgaacaaccaaaagctgctcccaacaaaatcaatcaagtagct
tatctcatcccccgtcactggacaaaagccaaagctttacagccgattctggaaatggaa
gatccagaaacagctttaatctttgtgcgtaccagacgcacagccgcagaactcaccaat
caattacaagctgctggtcatagtgttgacgaatatcacggtgacttgtcgcaacaagca
cgagaacgcttattaggtagattccgcaatcgtcaagtgcgctgggtggtagccacagat
attgccgcacgggggttagatgtcgatcaattatcccatgtgatcaactacgacttacct
gatagcgtagaaacctatgtccatcggattggtcgtactggtcgagctggtaaagaagga
acggctatttctttagttcagccttttgagcgacgcaaacaacaggcatttgagcgccat
aatcgccaaagttggcaattgctatcaattcctacacgggcgcaaattgaagccagacac
atcaataaattgcaagaacaagtaggagaagccttaactggcgaacgcctagcttcattc
ttgccaatagttagcgaattgattgaaaaatacgatgctcatgcgatcgctgcggcggca
ttgcaaatcgcttacgatgaaactcgtcctgcttggttgcaatcaggcgtagatccccaa
gaagacaacgtacccgtacccaaacccaagctcaataaacgtcgtgattcttctggtgaa
cgcagccgttcctcttggactaaatcagacagtaacggtggtgaagaagaaagacgaggt
actcccaagcctaaactgcggacaacacatcgtgaaccttctgtatcgcctaatagcaaa
aaactcggttga
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