Halotia branconii: QI031_08710
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Entry
QI031_08710 CDS
T09011
Symbol
sigC
Name
(GenBank) RNA polymerase sigma factor SigC
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
hbq
Halotia branconii
Brite
KEGG Orthology (KO) [BR:
hbq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbq03021
]
QI031_08710 (sigC)
Transcription machinery [BR:
hbq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QI031_08710 (sigC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
HTH_28
GerE
Motif
Other DBs
NCBI-ProteinID:
WGV27552
UniProt:
A0AAJ6PB91
LinkDB
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Position
complement(1969180..1970430)
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AA seq
416 aa
AA seq
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MPATSFYADAAYNTPKSRQVLDSDLTVDDSELSADDLQELETAAADPANFGANTNRRSTD
LVRLYLQEIGRVRLLGRDEEVSEAQKVQRYLRMRVVLANAAKQGDEVVSPYLRLIEVQER
LASELGHRPSLERWANTAGVNLSDLKPILANGKRRWAEIAKLTVEELEKVQTQGLQAKEH
MIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQG
ITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQVREVL
LRVPRSVSLETKVGKDKDTELGELLETDSVTPEEMLMRESLQKDLHNLLADLTSRERDVI
LMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYLESLS
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgccagcaacatctttttacgcagatgccgcctacaataccccaaaatctcgccaagtt
ttggactcagatctcacggttgatgacagtgagttgtcggcagacgatctacaagagcta
gaaacagctgctgctgaccctgctaactttggtgctaacactaaccgtcgcagtacagat
ttagtacgtttatatcttcaggagattggtagagttaggttattagggcgtgatgaagaa
gtttcagaagcccaaaaagtccagcgctacttgcggatgcgtgtagtacttgccaatgct
gccaagcaaggggatgaagtagtttcgccttatttgaggttaattgaagttcaggagcgt
ttagcatctgaattgggacaccgcccctctttagaaagatgggctaacactgctggtgta
aatttatcggatctcaaaccgattttggcaaatgggaagcgtcgctgggcagaaattgcc
aagttgacagtcgaagaattggagaaagtccagactcaaggactccaggcaaaagaacac
atgatcaaggctaatcttcgcctagtggtgtctgttgccaaaaagtatcaaaatcgtggt
ttggaattattggatttagttcaagaaggtacacttggtttagagcgtgcagtagaaaaa
tttgatcccaccaaaggatatcgctttagcacctacgcttactggtggattcgtcaagga
attactagagcgatcgctacttctagtcgcacaatccgcctacctgtacatattacagaa
aagcttaacaaaattaaaaaagctcaacgtaaaattgctcaagaaaaaggtcgtactcct
accctagaagacctggctattgagttagacatgactcctacccaagtccgggaagttttg
ttaagagtgcctcgttctgtttcgctagagactaaagtaggtaaagataaagacactgag
ttgggtgaattacttgaaaccgacagtgtgactcctgaagaaatgctcatgcgagaatct
ttacaaaaagacttgcataatttgttggctgatttaactagccgcgaacgtgatgttatt
ctcatgcggtttggtttagcagatggtcatccctactcgttagcagaaattggccgcgct
cttgacttatcgcgggaacgggtacgtcaaattgaatcaaaagctctgcaaaaattgcgt
caacctaaacgacgcaacctcatccgtgactatttggaatcccttagctag
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