Hevea brasiliensis (rubber tree): 110632711
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Entry
110632711 CDS
T05150
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110632711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110632711
03041 Spliceosome [BR:
hbr03041
]
110632711
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110632711
Spliceosome [BR:
hbr03041
]
Complex B
Other components
Prp19-related factors
110632711
Complex C
110632711
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
UTP6_C
ARM_TT21
ARM_TT21_C
NRDE-2
PPR
Motif
Other DBs
NCBI-GeneID:
110632711
NCBI-ProteinID:
XP_021636722
LinkDB
All DBs
Position
Unknown
AA seq
918 aa
AA seq
DB search
MSISRELYPSQDDLLYEEELLRNPFSLKLWWRYLIARREAPFKKRFIIYERALKALPGSY
KLWHAYLTERLEIVRNLPVTHSQYETLNNTFERALVTMHKMPRIWIMYLQTLTNQKLITR
ARRTFDRALCALPVTQHDRIWELYLRFVSQEGMPIETSLRVYRRYLKYDPSHIEDFIEFL
VNSRLWQEAAERLASVLNDDQFYSIKGKTKHTLWLELCDLLTRHAKEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRGLFEKARDIFEEGMTTVVTVRDFSVLFDAYSQFEESMV
AHKMENLDLSDEEEDVLEESGSLQDEDVRLEVNSKFEKKILSGFWLHDDNDVDLMLARLE
YLMDRRPELANSVLLRQNPHNVEQWHRRIKLFEGNPTKQILTYTEAVRTVDPMKALGKPH
TLWVAFAKLYENHNDIVNARVIFDKAVQVNYKTVDNLASIWCEWAEMEIRHKNFKGALEL
LRRATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWTFYVDLEEGLGTLESTRAVYERLLD
LRIATPQIIINYALLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK
LERARELFEHALEMAPADSVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNEKLEMY
KIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGEIDRARGIYVFA
SQFADPRSDEDFWNEWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQR
LNIDEAKDKLKLAGVPEDEMAALERQLAPVANNATAKDSGRKVGFVSAGVQSQPDGAMKV
IANQEDIELPEESDSEDDEKVEITQKDVPSAVFGGLARKREETEEDKVGDDTTAAKDKDG
GGAGNLGALERIKRQKRG
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatttctagagagctttacccttctcaagatgatctcttatacgaagaggagctg
ttgcgtaacccattcagccttaagctctggtggcgctacctaatagcccgccgtgaagca
cctttcaaaaagcggttcattatctatgagagagccctcaaagctttacctgggagctac
aagctttggcatgcatatcttactgagcgtctcgaaatcgttagaaacctaccggtcact
cactcccagtatgaaaccctgaacaatacatttgaaagagcattggttactatgcataaa
atgcccagaatttggatcatgtacttgcaaaccctaaccaaccaaaaattgattacccgc
gcacgtagaacttttgatagagcactctgtgcattgcctgtcactcagcatgataggatt
tgggagctatatttgaggtttgtgagccaagagggtatgccgattgagacttctcttcgg
gtttataggaggtacttgaagtatgatcctagtcatattgaggattttattgagtttttg
gtgaattctcgtctttggcaagaagcagctgagagactagcttcagtgttgaatgatgat
cagttttattcaataaaggggaaaacaaagcatacattgtggctagaattgtgtgatttg
cttactagacatgcaaaggaagtgtctgggttgaatgtggacgccattattaggggtggg
attaggaagtttacagatgaggttggcaggttgtggacgtcacttgctgattattatatc
aggaggggtttgtttgagaaggcaagggatatttttgaggagggaatgactacggtggtt
acggtgagagattttagtgttttatttgatgcatattcacagtttgaagagagtatggtt
gcgcataagatggagaatttggacttgagtgatgaggaagaggatgtgttggaggagagt
ggttccttgcaggatgaagatgttcgtttggaagtgaattctaagtttgagaagaagata
cttagtgggttttggttacatgatgataatgatgtggatttgatgttggcccggttggag
tatcttatggatagaaggccagaattggccaatagtgtacttttgcgacaaaatccacat
aatgtggaacaatggcacaggaggattaagctttttgagggtaatccaactaaacagata
ctgacttatactgaggcagtaagaacggttgatccaatgaaagcattaggaaagccccac
accttgtgggttgcttttgccaagttgtatgagaatcacaatgatattgtcaatgcaaga
gtaatttttgataaggcagtgcaagtgaattataagactgtggataatctagctagcatt
tggtgtgagtgggctgaaatggaaattagacacaaaaatttcaaaggtgcacttgagctg
ttgaggcgggctacagcagaaccatcagttgaggtcaaaagaagagtggctgctgatggc
aatgaacctgtccaaatgaagttgcataagtccttgagactctggaccttttatgtggat
ttggaagagggccttgggaccttggagtccacacgagcagtttatgagcggctattggac
ctgagaatagccacaccacaaatcattatcaattatgcattgcttctagaagaacataaa
tactttgaagatgcattcaaggtttatgaaaggggagtgaaaatattcaagtaccctcac
gtgaaagacatatgggtcacatatctttcaaagtttgtaaagagatatggtaagacaaaa
ctggaacgagcaagagagttgtttgaacatgctcttgaaatggctcctgctgattcagtc
aaacccttgtatcttcaatatgcaaagctggaagaggattatggtttggcaaagcgagcc
atgaaggtttatgatcaagcaactaaggctgtcccaaataatgaaaaactggagatgtat
aaaatttatattgcacgtgcagctgagatatttggtgtcccaaaaacaagagaaatatat
gagcaagcaatagagtctggtctacccgataaagatgtaaagacaatgtgcttgaagtat
gctgagttggagaagagcctgggagaaattgatcgagctcgtggaatatacgtatttgca
tctcaatttgctgatccgcgatctgatgaagatttctggaatgaatggcatgaatttgag
gtgcaacatggaaatgaagatactttccgagaaatgctgcgtataaaacgaagtgtttct
gcaagctatagccagacgcactttattctgccggagtatttaatgcagaaggatcaaagg
ctgaatattgatgaggcaaaagacaaattaaaactggctggggtccctgaagatgaaatg
gctgctctagagaggcaattagcccctgtggccaacaacgctacagctaaagatagtggc
agaaaggtgggctttgtgagtgctggggtgcaatcacaacctgatggggcgatgaaagtt
attgctaaccaagaagacattgagctaccagaagaaagtgactccgaagacgatgaaaaa
gtggaaattacacaaaaagatgttccatctgctgtctttggaggattggccaggaagagg
gaagagactgaagaagacaaggttggagatgataccacagctgctaaggataaggatggt
ggtggtgcaggcaatcttggtgcccttgagagaataaagagacaaaaacggggatga
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integrated database retrieval system
