Hevea brasiliensis (rubber tree): 110632908
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Entry
110632908 CDS
T05150
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110632908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110632908
03012 Translation factors [BR:
hbr03012
]
110632908
Enzymes [BR:
hbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110632908
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110632908
Translation factors [BR:
hbr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110632908
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
Dicer_dimer
AAA_11
T2SSE
ATPase
AAA_23
NACHT
NPHP3_N
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
110632908
NCBI-ProteinID:
XP_021636975
LinkDB
All DBs
Position
Unknown
AA seq
1055 aa
AA seq
DB search
MLLRDNEKQELVSREKKDRRDFEQIAALASRMGLYSHLYVKVVVFSKVPLPNYRFDLDDK
RPQREVILPFGLQRRIDAYLGEYLFQKSKIKERFPDISFSRSSSSSSLATDEGLFEHPEP
LASSKAVMEKILWRRSLQLCDQQRAWQDSPEGRKMLEFRKSLPAYKEKDAILKAISQSQV
VIISGETGCGKTTQIPHFILESEIESVRGASCSIICTQPRRISAMSVSERVASERGEKLG
ECVGYKVRLEGIKGRDTHLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLI
VLKDLLPRRPELRLILMSATLDAELFSSYFGGAPILRIPGFTYPVRTQFLENILEMTGYR
LTLYNQIDDYGQDRVWRISKQAPRKRKSQIASAVEEALRSADFKEYSPQTRESLSCWNPD
CIGFNLIECLLCDICENERPGSVLVFMTGWDDISSLKDKLLSHPILGDPGRVSLLTCHGS
MASSEQRLIFDEPKDGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLL
PSWISKVSAQQRRGRAGRVQPGECYHLYPRCVYEAFAEYQLPEILRTPLQSLCLQIKSLQ
LGSISEFLSRALQSPELLAVQNAIEYLKIIGALDKNENLTVLGQYLTMLPMEPKLGKMLI
LGAIFNCLDPILTVVAGLSVRDPFLTPMDKKELAEAAKSQFSNDYSDHLALVRAYEGWKD
AERDFAGYDYCWKNFLSMQSMKAIDSLRREFFSLLKDAGLVDSNAITCNAWSHEEHLIRA
VICYGLYPGISSVVHNEKSFSLKTMEDGQVLLYSNSVNARESKIPYPWLVFNEKIKVNAV
FLRDSTAVSDSVLLLFGGSISKGDIDGHLKMLGGYLEFFMKPAIAEMYQSLRRELDELIQ
TKLLNPRMDIHTYHELLSAIRLLVSEDKSDGKFVFGRQVLKPSKISVMATRPALVLRTES
GPGGDNSKSQLQTLLTRAGYAAPIYKTKQLKNNQFRATVEFNGMQVMGQPCNNKKSAEKD
AAAEALQSLMGGAQTGHEYINQMSMLLKKSKKDHY
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgcttctgcgagacaatgagaagcaagagttggtctcaagggaaaaaaaggacagacgt
gattttgaacaaatagcagctttggcaagcagaatgggtttgtatagccatctatatgta
aaagttgttgtatttagtaaggtcccactgccaaactacagatttgatttggatgataag
cgtccgcagagggaggtgatcttgccttttggtttgcaaagaagaattgatgcttatctt
ggagagtacctctttcaaaagtccaagattaaggaaagatttccagatatttccttttct
agatcaagcagcagcagtagtctggctactgatgaaggactttttgagcatccagagcca
ctggcttccagcaaggctgtaatggagaaaattctatggcggcgaagtttgcaactgtgc
gatcagcaacgtgcttggcaggattctccagaaggcagaaaaatgctggaatttcggaaa
agtctccctgcatataaagagaaagatgcaatattgaaagccatttcacaaagtcaggtg
gtcattatctctggtgaaactggttgtggcaagaccacacaaattccccatttcatatta
gaatcagagatagaatctgtccggggagcttcttgtagtattatatgtacacagccaaga
cgaatatctgctatgtctgtttctgagagagttgcttcagaaaggggagagaaattgggt
gaatgcgttggatataaagttcggcttgaaggtataaaaggaagagatacccaccttctc
ttttgcaccacaggcatcttgctgagaagattgcttgttgatagaaatttgaaaggcata
actcatgttattgtggatgagattcacgaacgtggaatgaatgaggactttctgcttatt
gtccttaaagatctccttcctcgtcggccagaactgaggctgattctgatgagtgcaacc
ctcgatgcagagcttttctcatcctactttggtggagctccaatacttcgcattccaggt
ttcacatacccagtgcgaactcagtttctggaaaatatcctggaaatgacgggttacaga
ttaaccttatacaaccaaattgatgattatggccaagatagggtgtggaggataagtaaa
caagctccaagaaagaggaagagccaaattgcttctgctgtggaggaagcactaagatct
gctgatttcaaggagtatagtccccagactcgagagtctttgtcatgttggaatcctgat
tgcattggttttaatctcattgagtgtcttttgtgtgatatatgcgagaatgagaggcct
ggttctgttctagtttttatgactggatgggatgacattagttctctgaaggataagctc
ctatcacatcctattttaggagatccaggtcgagtgtcgttgctcacttgccatggttct
atggctagttcagagcagagattaatatttgatgagcccaaagatggtgtgaggaaaata
gtgctagctactaatattgctgagacaagtatcacaatcaatgatgttgtttttgtactt
gactgtggaaaggcaaaggagacttcatatgatgcactgaataacactccttgtcttctt
ccttcttggatttctaaggtttctgctcaacaaaggagaggaagagctggccgtgttcaa
ccaggagaatgttaccatctctatcctagatgtgtttatgaagcctttgcagagtatcaa
ttaccagaaattttgaggacgcctttgcagtctctttgtctgcaaatcaaaagtttgcaa
cttggaagtatttctgagtttctctcaagggctttacagtcaccggagttgttggcggtt
caaaatgccattgaatacttaaaaatcattggggccttggataagaatgaaaatttgact
gttctaggacaatatttgactatgcttcccatggagcctaaacttgggaagatgctcata
ttaggtgctatcttcaattgcctggatccaatattaactgttgttgctggccttagtgtt
agagatcctttcttaacaccaatggataagaaggaacttgcagaggctgctaaatctcaa
ttttctaatgattatagtgaccaccttgcccttgtccgggcctatgagggctggaaagat
gctgagagagattttgcagggtatgactattgttggaaaaattttctatctatgcaatct
atgaaagcaattgattctcttcggagagagttcttctccttgctcaaggatgctggcctg
gttgatagcaacgctataacctgcaatgcatggagtcatgaagagcatctcattcgagca
gttatttgctatggcctctatccgggaatttcctctgttgtgcataatgaaaagtctttt
tctctgaaaactatggaggatggacaagtacttctgtactctaactcggtcaatgctcgg
gaatctaaaattccttatccatggctggttttcaatgagaagataaaggttaatgctgtt
ttccttcgggattcaacagctgtttctgattcagtgttgcttctttttggtggaagcatc
tctaagggggacattgatggacatttgaagatgctgggaggatatttggaattcttcatg
aaacctgctatagctgaaatgtatcaaagtttgaggagagaacttgatgagctgattcag
accaaacttttgaatcctaggatggatatacacacgtatcatgagctcctatctgccata
cgtttactggtttcagaggataaaagtgatggcaaatttgtatttggtcgtcaagttctg
aaaccctcaaagatctctgttatggcaacacggccagctctagtgttgaggactgaaagt
ggacctggaggtgataattctaagagtcagctccaaacattgctaaccagggcaggatat
gctgcaccaatatacaagacaaagcagttgaagaacaaccaatttcgagctactgtggag
tttaatggaatgcaagtaatggggcagccttgcaacaacaagaagagtgcagagaaggat
gcagcggctgaggccctgcagtcactgatgggtggggcccagacaggccatgaatacatt
aatcaaatgtcaatgctgctaaagaaaagcaagaaggatcactactga
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