Hevea brasiliensis (rubber tree): 110633208
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Entry
110633208 CDS
T05150
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110633208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbr03021
]
110633208
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110633208
Transcription machinery [BR:
hbr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110633208
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110633208
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
110633208
NCBI-ProteinID:
XP_021637406
LinkDB
All DBs
Position
Unknown
AA seq
1024 aa
AA seq
DB search
MDSDKVLQNPRFTSSSSKPMPSNELSQKPPPSLFDRFKALLKQREEQVRVSAEEDDVAGP
ILSTEEIVQLYELVLDELIFNSKPVITDLTIIAGELREHGEGIADAICARIIEVPVDQKL
PSLYLLDSIVKNIGREYVKYFSSRLPEVFCEAYRQVHPNLYPSMRHLFGTWSTVFPPSVL
SKIETQLQFSPQVNSQSSGLSSLKASDSPRPTHGIHVNPKYLRQLEHSSDNNAQHVRGAS
STLKIYSKKPAIGYDEYDSDHAEVKSSQVGAQRLNTAGSVGHTSFTLGVNKLHPSSSSGL
VRRLSPSRVGAERPLPSEVDDFTMGNSPRRFVDGASPSHPVLNYGPVRAIGRDEETNERR
RKQYYDDNHNRLEASIAYGLSNGRERQGPRALIDAYGDDRRNRIPNSKLLQIERVDFDGI
ANKVGPRSWQNTEEEEFDWEDMSPTLADRSRSNDFLPSVPPFVGAGARAGIGTTVAGQLD
SDIGSNLSGQAQLSLVDDSSNIAEDAVPILGPGHGSAAKITGFQTERNQIMGSRFPREAW
KLPHHFPQTTDLVNAKESREFQIPFSRSGIPYSGSKSLASLSDKLPDTDAQLVRPPTLSS
RLISSIAPSSTGVWPHVNVHKSHPPPVHHIFPPQKQSRSQFDSVTGTNTVNHSLHKSSFL
TEQQFNSVESKEPSLMKRPLLPGQRTTQNKPNQSQSNPFQLQYLPSNEALENLPPSVASL
PPYPQSVPLCHGYAMKGHGAVMSMVPSNAVPAGLPLVFNNIPNALHSQVGVRPPLPPGPP
PASQMIPNSQNAGPVACSQSPGSDFSGLISSLMAQGLISLTSKTPVQDSVGLEFNADLLK
VRHESAVTALYADLPRQCTTCGHRFKCQEEHSNHMDWHVTKNRMSKNRKQKPSRKWFVSA
NMWLSGAEALGTEAVPGFLPTETIVEKKDDEEMAVPADEEQNACALCGEPFDDFYSDETE
EWMYKGAVYLNAPDGSTAGLDRSQLGPIVHAKCRSESSVVLPDDFRHEEAGNTEEASHRK
QMRS
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggactcggataaagtacttcaaaaccctaggtttactagtagctcctccaagcccatg
cccagcaatgagctatcgcagaagccgccaccgtcattgttcgacaggttcaaggcattg
ttgaagcagcgggaagagcaggtcagggtgtctgcggaggaggatgacgtggcagggcct
attctgagtaccgaggagattgtgcagctttatgagttggtgcttgatgaattgattttc
aattcgaagcctgtcattaccgatttgacgattattgccggcgagttgagggagcatggg
gagggcattgctgacgctatctgtgcccgcatcatcgaggttcctgtggatcaaaaactg
ccatcgctatatcttttggacagcattgtcaagaacattggccgtgaatatgttaaatac
ttctcatcccgcttaccagaggttttctgtgaggcatacagacaagttcaccctaacctg
tatccttcaatgcgtcacctgtttggtacatggtctacagtgtttccaccttctgtgctt
agcaagattgagactcaactgcagttttctccacaagttaatagtcaatcctctggcttg
tcttccttgaaggcatctgattcaccaaggccaacccatggcatacatgttaatccaaaa
tatttacgtcagttggaacattcttcagataataatgctcagcatgtaagaggagcttca
tcaactctaaaaatatatagtaaaaaacctgccattggttatgatgaatatgattctgat
catgcagaggtcaaatcttcacaggttggagcccaaagattaaatacagcgggaagtgta
ggtcatacatcttttacacttggggttaataagctgcacccatcttcaagttctgggctt
gtgagacgcttgtcaccttcaagagttggagctgagaggccattgccttcagaagttgat
gactttaccatgggaaattctcctcgaagatttgttgatggggcttctccatcccatcca
gtgctcaattatggacctgttagagccattggaagagatgaagagacaaatgaacggaga
agaaaacagtattatgatgataaccataaccgactggaagcatctattgcatatggccta
tccaatggacgtgagcgtcaaggacccagagctttaatcgatgcatatggagatgacaga
cggaacagaattccaaatagtaaactgttgcaaatcgaacgtgtagattttgatggcatc
gccaataaagtgggtccaagatcttggcagaatactgaagaggaggaatttgactgggaa
gatatgagccctactctagctgaccgcagcaggagcaatgatttcttaccatctgttcca
cctttcgtaggggctggggctagggctggcattggaacgactgttgctggccaattggat
tctgatattgggagcaatctatctggtcaggctcagctatcgttggtggatgattcctct
aatattgctgaagatgcagttcccattctgggccctggtcatggatctgcagctaagata
actggattccaaactgagagaaatcagattatgggttctcgatttcctcgagaagcgtgg
aagttgccacatcacttccctcagacaacagatctcgtaaatgctaaagaaagtagggaa
tttcagatacccttttctagaagtggtataccctattcaggcagtaagagtttggcttcc
ctcagtgacaaacttccagatactgatgcccagcttgtcaggcctccaactctttcatca
cggttgatttccagtattgcaccatcatcaactggggtatggcctcatgtaaatgtgcat
aaatctcatccacctcctgtgcaccacatttttccaccacagaagcagagtagaagtcaa
tttgattcagtaactggaactaatactgtaaatcatagtttacataagtcttcctttttg
acggagcaacagttcaatagtgttgaaagcaaagaacccagtttgatgaagcgaccacta
ttacccggtcaacgtactactcagaataagccaaaccagtctcaatctaatccttttcag
ctacagtatcttccatctaatgaggctctagaaaatcttccgccatctgtggcttcactg
cctccttatccacagtctgttccactgtgccatggatatgccatgaaagggcatggtgct
gtcatgagtatggttccttcaaatgctgtacctgctgggcttcctttagtattcaacaat
atcccaaacgccttgcattcacaggttggggtccggccacctctacctccaggtcctcct
cctgcttctcaaatgatacctaactctcaaaatgctggtccagttgcctgtagccaatca
ccaggcagtgatttttcgggtttgattagttctctcatggctcaaggtttgatctcattg
acaagcaaaacacctgtacaggattctgtgggactggagttcaatgctgatcttcttaag
gtgcgccatgagtcagcagtaactgccttatatgctgatttgcccaggcagtgtacaaca
tgtggccatagatttaagtgtcaagaagagcacagtaatcacatggattggcacgttact
aagaaccggatgtccaagaaccgtaagcagaaaccctctcgcaagtggtttgttagtgca
aatatgtggcttagtggggcagaggcattgggaactgaagcagttcctggatttttgcct
actgagaccatcgtggagaagaaggatgatgaggaaatggctgttcctgctgatgaggaa
cagaatgcatgtgcattatgtggagagccttttgatgatttctatagtgatgaaactgag
gaatggatgtacaaaggggctgtctacctgaatgcacctgatgggtcaacagcaggcttg
gataggtcccagttaggtcctatagtacatgctaaatgcaggtctgagtctagtgtggtt
ctgcctgacgattttagacatgaagaagcgggaaacactgaagaggctagtcacagaaaa
caaatgcggagttaa
DBGET
integrated database retrieval system
