Hevea brasiliensis (rubber tree): 110634362
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Entry
110634362 CDS
T05150
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110634362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hbr04131
]
110634362
Membrane trafficking [BR:
hbr04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
110634362
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
zf-HC5HC2H
PPR
zf-HC5HC2H_2
AlaDh_PNT_N
DUF2175
Motif
Other DBs
NCBI-GeneID:
110634362
NCBI-ProteinID:
XP_021639021
LinkDB
All DBs
Position
Unknown
AA seq
1006 aa
AA seq
DB search
MVHIAYDSFELLSGCPVKIYAIESYCSKLLVGCSDGALRIYVPEPSSERASLSDYHGQAQ
ELRKETYALERTVTGFSKKPLFSLEVLASRELLLSLSESIAFHRLPNLETLAVITKAKGA
NVYSWDDRRGFLCFARQKRVSIFRHDGGRGFVEVREFGVPDTVKSMSWCGENMCLGIRKE
YLILNATNGALTEVFPSGRLAPPLVVSLPSGELLLGKENIGVFVDQNGKLLQAERICWSE
APSVVVIQKPYAVALLPRRVEIRSLQVPYPLIQTIVLQNVRHLIQSNNAVIVALDNSAYG
LFPVPLGAQIVQLAASGNFEEALALCKLLPPEDSNLRAAKEWSIHIRYAHYLFENGSYEK
AMEHFLASRVDIIYVLSLYPSIVLPKTSMLPEPEKLMDMSSDAPYLSRGSSGVSDDTESS
PLQLTEFDEHAAHESKKMSHNTLMALIKFLQKKRYSIIEKATAKGTEEVVFDAVGENFGP
YDSSRLKKSNKSRGTVSINSGAREMAAILDTALLQALLLTGQSSAALELLRGLNYCDIKI
CEEILQKQNHYTALLELYKCNSMHREALKLLHQLVEESKSSQAQPDLNSKFKPESIIEYL
KPLCGTEPMLVLEFSMLVLESCPTQTIELFLSGNIPANLVNSYLKQHAPSMQGRYLELML
AMNENGISGNLQNEMVQIYLSEVLEWHTDLSAQQKWDEKVYSPTRKKLLSALESISGYNP
EALLKRLPADALYEERAILLGKMNQHELVVSLYVRKLLVPELALSYCDRVYESASQQPSA
KSSGNIYLALLQIYLNPRKTINNFEKRITNIVLSRNTSIPKVGSGTSVKAKGGRRAKKIA
PIEGAEDMRFSLSSTDTSRSDGDADEFTGEGGSKIMLDEVLDLLSRRWDRINGAQALKLL
PEETKLQNLLPFLGPLMRKSSEAYRNLSVIKSLRQSENLQVKDELYNQRKAAVKITSDSM
CSLCNKKIGTSVFAVYHNGKTLVHFVCFRDSQSMKAMAKGTPPSKR
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggtgcacattgcctacgattccttcgagctcctcagtggctgccccgtgaaaatttat
gctatcgaatcctactgctcaaagcttcttgtcggctgctccgatggggcccttcgaata
tacgtcccggaaccctcctccgaacgagcttcactgtcagattatcatggccaagctcaa
gagctgcgaaaggaaacttatgcactggagagaactgttacggggttttcaaagaagcct
ctcttttcattggaggtattggcatcgagagagctacttttatcgctctctgaatcaatc
gcctttcatagattacccaatttggagactttagctgtgatcaccaaagcaaaaggcgcc
aatgtgtattcatgggatgacagaagagggtttttgtgctttgctaggcaaaagcgagtc
agcatcttcaggcacgatgggggacggggatttgtggaggtaagggaatttggtgttcca
gatacggtgaagtccatgtcttggtgtggtgaaaatatgtgtctagggattagaaaggaa
tacctgatactgaatgccactaatggtgcattgactgaggtatttccttctggtagatta
gcccctcctttagtggtctctctcccttctggggagcttcttcttggaaaggaaaacatt
ggggtttttgtggaccaaaatggcaagcttcttcaagcagagaggatttgttggtcagag
gccccttctgtcgttgtcattcagaaaccttatgcagtagctctgcttccaagacgtgtt
gagattcggtctctccaagttccatatccattgatacagaccattgttcttcaaaatgtc
cgtcatcttattcaaagcaataatgcagtaattgttgcactagacaattctgcatatggg
ctcttccctgttcctcttggtgcacagattgtacagttagcagcatctgggaattttgag
gaagccttggccttatgcaagctgcttccacccgaagattcaaaccttcgagcagcaaag
gagtggtcaattcatataagatatgcccactatctttttgagaatgggagctatgagaag
gccatggaacactttctagcatcccgagtggatatcatctatgtcctttctttgtatcca
tctattgttcttcccaagacatctatgcttcctgaaccagaaaagctgatggacatgtct
tcagatgctccatatctctcaagaggctcgtctggagtgtcagatgatacggaatcctcc
cctctgcagttaactgaatttgatgagcatgcagcccatgaatccaagaaaatgagccat
aatactctcatggctctcattaagttcttgcagaaaaagagatatagtataattgaaaag
gccactgctaagggaacagaagaagttgtttttgatgctgttggagagaattttggacca
tatgattctagtaggttaaagaaatccaacaagagccgtggtacagtttccattaactct
ggtgccagggaaatggcagcaatacttgatacggcactactccaagctcttcttcttact
ggacagtcttcagcagctttagaattacttagaggtcttaactactgtgacataaagata
tgtgaggagattcttcaaaaacagaatcattatactgctttattggaactttataagtgc
aactccatgcaccgagaagctcttaagctcttgcatcaattagttgaagagtcaaaatca
agccaagcacaacctgaccttaactcaaagttcaaacctgaatcaattattgaatatctt
aagcctctctgtgggacagaacccatgcttgtcctggagttctcaatgcttgttcttgaa
agctgtccaacacaaactattgagctcttcttgtcggggaatattcctgcaaacttggtc
aactcttatctgaagcagcatgcgccgagcatgcagggcagatatttagaacttatgctt
gcaatgaatgaaaacgggatctctggaaacctgcagaatgaaatggtacaaatctatctc
tcggaagtacttgaatggcacacagacctgagtgctcagcagaaatgggatgagaaggtt
tattccccaacaaggaaaaaattattgtctgctttggagagtatctcagggtataaccca
gaagctttgttgaaacggctaccagcagatgcattatatgaagagcgtgcaattttattg
gggaaaatgaaccaacatgagcttgtcgtatctctttatgttcgtaagcttcttgtccct
gaacttgcattatcctattgtgatcgggtttatgagtctgcatctcagcaaccatctgca
aaatcttctggcaatatataccttgctcttctgcaaatttatctgaatccacggaagaca
attaataactttgagaagcgaattaccaatatagtgttgtctcggaatacaagtattcca
aaggttggttctggtacttcagttaaagcaaagggaggtcgcagggctaagaaaattgca
ccaatagagggtgcagaggacatgcgttttagtcttagtagcactgacactagtagaagt
gatggtgatgcagatgaatttactggggaaggaggttcaaagatcatgcttgatgaggtc
cttgaccttttgagcagaaggtgggacagaatcaatggagctcaggcacttaaactttta
ccagaggaaacaaaattgcagaatttgcttccttttcttggacctcttatgagaaaatcc
agtgaagcataccggaatctctcagttatcaagagtttgaggcagagtgagaacctgcag
gtgaaagatgaactgtacaaccaaaggaaagcagcggtaaagatcaccagtgatagtatg
tgttctctttgcaacaagaaaattggaacaagtgtttttgcagtctatcacaatgggaaa
acgctcgtgcacttcgtatgctttagggactcgcagagtatgaaagctatggcgaaaggc
acaccaccaagcaagcgatga
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