Hevea brasiliensis (rubber tree): 110634852
Help
Entry
110634852 CDS
T05150
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110634852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hbr03041
]
110634852
Spliceosome [BR:
hbr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110634852
Complex C
U5 SnRNP specific factors
110634852
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
110634852
NCBI-ProteinID:
XP_021639691
LinkDB
All DBs
Position
Unknown
AA seq
2356 aa
AA seq
DB search
MWNNNGEAHIAPPGTSVPSIPPPPVPAQPSYTVLAPQTPPTPAEAEAKLEEKARKWQQLN
TKRYSDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYK
LLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHF
KRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLING
PSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPL
YRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLGVYHTPMIMFIKA
EDPDLPAFYYDPLIHPITSTNKERREKKAHDDDEDDDFLLPEGVEPLLQDTQLYTDTTAA
GISLLFAPRPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELH
HRPPKAQKKKHLFRSLAATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDY
NFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQY
TFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFF
LRGIVPLLERWLGNLLARQFEGRHSKGTAKTVTKQRVESHFDLELRAAVMHDVLDAMPEG
IKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRER
IRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESR
KFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSR
IKRHLLTQRAFKEVGIEFMDLYSALIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWI
KPADSEPPPLLVYKWCQGINNLQGIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLV
LDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLVLGLTRASE
IAGPPQMPNEFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDP
NNENMVGYQNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSK
DNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKV
FENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRI
KIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSH
EEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRI
NTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALG
GVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWS
PTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQ
ELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDVFDQKASNK
YWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWF
PGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWF
VDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKW
KTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKI
EKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKT
IITEPHHIWPSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPP
SQQRQQIAEIEKQAKEASQLTAVTTKTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAIS
ATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQV
KEIRCIAMVPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTTHARI
LENNKQWDGEKCIILTCSFTPGSCSLTAYKLTSSGYEWGRVNKDTGSNPHGYLPTHYEKV
QMLLSDRFLGFYMIPDNGPWNYNFMGVKHTVSMKYGIKLGTPREYYHEDHRPTHYLEFSN
LEEGETAEGDREDTFT
NT seq
7071 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaataatggagaggcgcatatcgccccaccagggacgagcgttccatcgata
cctccaccgcctgttccagcacagccctcttatactgtgcttgccccgcaaacacctccg
actccggctgaggcggaggctaagctcgaagagaaggcccgtaaatggcagcaacttaat
acgaagaggtatagcgataagaggaagtttggattcgtagagacgcagaaagaggacatg
cccccagagcatgtcagaaaaattatcagagaccatggggacatgtcctccaagaaatat
cgtcatgataaacgtgtgtatcttggagcccttaaattcattccacatgcagtttacaag
cttcttgagaatatgccgatgccctgggagcaggttcgtgatgtgaaggttctataccat
atcaccggggctatcacttttgtgaatgaaattccatgggttgttgaacctatttatttg
gctcagtggggtacaatgtggatcatgatgcgaagagagaagagagatcgtcggcatttt
aagagaatgaggtttccaccatttgatgatgaggaacctccattggactatgctgataat
ttgttagatgttgatcctctagagcctattcagttggagttggatgaagaagaagattct
gcagtgtacacttggttttatgaccataagccccttgtcaaaacgaaacttatcaatggt
ccaagttataggaagtggcatctctcccttcccataatggcaactcttcaccggttggca
ggacaacttctatctgatctaattgatcgcaattatttttacttgtttgacatggagtcc
ttctttacggctaaagcattaaacatgtgcatacctggtggtcctaaatttgaacctttg
tatcgtgacatggagaaaggggatgaagattggaatgagttcaatgatataaacaaactc
attattcggtcacctctcaggacagagtacagaattgcattccctcatctttataacaat
aggcccaggaaagtaaagcttggtgtgtatcacactcccatgatcatgttcattaaagcc
gaggatcctgatttacctgctttttattacgatccattaattcaccctataacctctact
aacaaggaacgtcgagaaaagaaggctcatgatgatgatgaggatgatgatttcctttta
ccagaaggagtggaacctttgctgcaagacactcagctttatacagacaccacagctgct
ggcatttccctgttatttgcaccccgaccttttaacatgagatctggccggatgcgacga
gcagaggatataccccttgtatcggagtggtataaggagcactgtcctccatcatatcca
gtgaaagttagggttagctaccagaaattgttgaaatgttttgttttgaatgagctgcat
catagaccacccaaagcacagaagaagaagcacctgtttcggtctctagctgcaaccaag
ttcttccaaacaacagaacttgattgggctgaagcaggcttacaagtttgtaagcagggg
tataatatgctgaacctgttgatacacaggaaaaatttaaattacctccatcttgattat
aattttaacttgaagcctgtgaaaacccttactacaaaggaacgcaagaaatcccggttt
ggcaatgcttttcatctctgccgtgagatcctgcgtttgacaaagcttgtggttgatgcc
aatatccagttccgtctgggtaatgttgatgcattccaactagctgatggtctacaatat
acattttcccatgttggccagttgactggcatgtatcgatacaagtacaggctgatgcga
cagattcgaatgtgcaaagacttgaagcatttgatatattaccgcttcaatacgggtcca
gtggggaaaggacctggctgtggattctgggcaccaatgtggagagtttggttgtttttc
cttcgtggcattgtgcctcttctagaacggtggttagggaatctccttgcgcgacagttt
gaagggcgtcattcaaaaggaacagccaagactgttacaaagcaacgtgttgagagtcac
tttgatttggagcttcgtgctgctgtcatgcatgatgttcttgatgccatgccagagggc
attaagcaaaataaagctagaaccatattgcagcacctcagtgaggcctggcgttgttgg
aaagccaacattccctggaaggttcctggcttgccagtgcctattgagaacatgattctt
cgttatgttaagtcaaaagcagactggtggacaaatgttgctcactacaatcgcgagcgt
ataagaagaggtgcaactgttgataagacagtatgtagaaaaaatcttggcagattgact
cgcctttggctaaaggcggaacaggaacgtcaacacaattatttgaaagatggtccatat
gtcaccccagaagaagctgttgccatttatacaacaactgtgcattggctggagtccaga
aagttctctcccattcctttccctccactgtcatacaagcatgacaccaagctacttatc
cttgctctggaaaggttgaaggaatcatatagtgtggctgtcagattgaaccaactgcag
agggaagagctgggtcttattgagcaggcttatgataatccacatgaggctttgtcacgg
attaaacgtcacctacttactcagcgtgccttcaaagaagttggcatagagttcatggat
ttatatagtgctttgattccagtttatgaaattgaacctcttgaaaaaataacggatgca
tatcttgaccaatatctgtggtatgaaggtgacaagcgccatctatttccaaactggatt
aagcctgcagattccgagccaccaccgctgcttgtttataaatggtgtcaaggtataaac
aatttgcagggtatctgggatacaagtgaggggcagtgtgtagtgatgctacaaacgaag
tttgagaagttctttgaaaagattgacttgacaatgttaaataggcttcttcgtttggtg
cttgaccacaacattgctgattatgttactgcaaagaacaatgttgtgttgtcgtacaaa
gatatgagccacacaaattcatatggtttgatacgtggtttgcagtttgcttcttttgtt
gtacaatattatggacttgtgctagatctcttagttcttggattgactcgagccagtgag
attgcgggtcccccacaaatgccaaatgaattcatcacttattgggatacaaaagttgag
acaaggcacccaattcggttatattctaggtatatagacagggtgcatatattgttccgc
ttcactcatgaagaggctcgagatctcatccagcgctatcttactgagcatcctgatccc
aacaatgaaaatatggttgggtaccaaaacaagaaatgctggcctagagatgcaagaatg
aggctcatgaaacatgatgtaaatcttgggagaagtgtattttgggatatgaagaatcgt
ctcccgcgaagcatcacaactttggagtgggagaacagctttgtttctgtttacagcaag
gacaatccaaacttgcttttcagcatgtgtggctttgaagtgcgaatacttcctaaaata
aggatgactcaggaagcattcagcaataccagagatggtgtttggaatttgcagaatgag
cagactaaagagcgaacggctgttgctttcctacgggttgatgatgagcacatgaaggtg
tttgagaatcgtgtgaggcagattcttatgtcttcagggtcaactactttcacaaaaata
gtcaacaaatggaatacagccctgataggtttgatgacttatttccgtgaagcaactgtg
catactcaagagctattagatttactggttaaatgtgaaaataaaatccaaactcgtatc
aaaattgggttgaactcaaagatgccaagccgatttcctcctgtcatcttctatacgcca
aaagaaatcggaggacttggcatgctatcaatgggtcacatattgatcccacaaagtgac
cttcgttatagccagcagacagatgttggtgtaacccacttcagaagtggaatgagtcat
gaagaggaccagctgattccaaatctttatcgctacattcagccatgggagagtgagttc
atagattcacagcgtgtctgggcagagtatgcccttaagagacaggaagcacaggcacaa
aacaggcgcttaacacttgaagatttggaagattcttgggacagaggtattccacgaatt
aatactttatttcagaaggaccgtcatactcttgcatatgacaaaggatggagagtacgc
actgatttcaagcaataccaagttctaaaacagaatcctttctggtggactcaccagagg
catgatgggaaactttggaacttgaacaattacagaacagatgttatccaagctctgggt
ggtgttgagggaattcttgagcataccttgttcaaaggaacttatttcccaacttgggaa
ggtctcttttgggagaaggcatctgggtttgaagagtcaatgaagtacaagaagcttacc
aatgcacagagatccggtctcaatcaaattcccaatcgtagatttacactttggtggtca
cccacgataaatagggccaatgtctatgtgggtttccaagtgcagttagatctaactggc
atctttatgcatggaaagatcccaaccttgaagatttcattgattcagatattccgagct
catctgtggcaaaagattcatgagagtgttgtcatggatctgtgccaagtcttggatcag
gagctggatgctctggaaattgaaactgttcagaaggaaacaattcatccaaggaagagt
tacaagatgaacagctcctgtgcagacattcttctctttgctgctcataggtggcctatg
tcaaagcctagtcttgtggctgaatcaaaagacgtgtttgaccagaaagccagtaataaa
tactggatagatgtgcagctcagatggggtgattatgactctcatgatattgagcgttat
acccgggccaaatttatggactatacaacagataacatgtctatatatccatctccaact
ggagtgatgattggacttgatctggcatacaatttgcattctgcttttggtaactggttt
cctggttcaaaaccacttctagctcaggcgatgaacaagataatgaagtcaaacccagcc
ttatatgtcttgagagagcggataaggaaaggtttacagttgtattcttctgagcctaca
gaaccttatttgtcgtcccagaactatggtgagatcttcagcaatcagataatatggttt
gttgatgacaccaatgtgtatcgtgtcaccattcataagacatttgagggtaaccttaca
acaaaacccattaacggtgcaatatttatattcaatccaagaactggccagctatttctg
aaggtcatccacactagtgtatgggcaggacagaagcgtcttggtcaacttgctaagtgg
aaaactgctgaagaagttgcagctcttgtgcggtctctgcctgttgaagaacaaccaaaa
caaattattgtgactcgtaaagggatgcttgatccattagaggttcacttgcttgatttc
ccaaatatagttattaagggaagtgagttgcagttgccattccaggcatgcttgaagata
gagaaatttggggatttgattttgaaggctacagagccacaaatggttctattcaatatt
tatgatgattggctgaagagtatttcgtcatacactgcattttcccgactcattttgatc
cttcgtgcacttcatgtgaataacgagaaggcgaagatgctactcaaacctgacaaaacc
atcattactgagccacaccacatctggccttctctcagtgatgatcaatggatgaaggtt
gaggttgctttaagagatctcatactttctgactatgccaagaaaaacaatgtgaacaca
tcagcactgacacaatctgagatccgtgatattattctcggtgctgaaatcactcctcct
tctcagcaaaggcaacagatagcagagattgagaaacaggccaaggaagcaagtcagtta
acagcagtcacaacaaagacaacaaatgttcatggtgatgaactcattgtcaccaccact
agtccttatgagcaggctgcatttgggtccaaaacagattggcgtgtcagagcaatatca
gctacaaatctgtaccttcgggtcaatcacatatatgtgaattcagaagatatcaaggaa
acggggtatacctatatcatgcccaagaatattttgaagaaatttatctgcatagcagat
ctgcgtactcaaattgcagggtacctgtatggtattagtcccccagataaccctcaggtc
aaggagattcgctgtattgccatggtacctcaatgggggactcatcaacaagttcatctc
ccatcagctcttcctgagcatgatttcctcaatgatctggagcccctgggatggatgcat
acccaaccaaatgagcttcctcagttgtcaccacaggatcttacaactcatgctcggatt
ttagagaataacaagcaatgggatggggagaagtgcatcatcttgacttgcagttttact
ccaggatcttgctcattaactgcatataagcttacctcaagtgggtatgagtggggacgt
gtcaacaaggacactggaagcaatcctcacggttacttgccaactcattatgagaaggtc
cagatgctactgagtgatcgattccttggtttctatatgattcctgataatggcccatgg
aactacaacttcatgggagtgaagcatacagtgagcatgaaatacggaatcaagctgggg
acaccacgggagtattatcatgaggatcatcgaccaacccattacttggaattcagcaac
ttggaggagggtgaaactgcagagggagaccgggaggataccttcacttga
DBGET
integrated database retrieval system
