Hevea brasiliensis (rubber tree): 110634986
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Entry
110634986 CDS
T05150
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110634986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hbr03041
]
110634986
03009 Ribosome biogenesis [BR:
hbr03009
]
110634986
Enzymes [BR:
hbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110634986
Spliceosome [BR:
hbr03041
]
Complex A
U2 snRNP components
U2 related factors
110634986
Complex B
110634986
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
110634986
Ribosome biogenesis [BR:
hbr03009
]
Eukaryotic type
90S particles
Helicases
110634986
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
AAA_22
DEAD
AAA_19
nSTAND3
ABC_tran
SRP54
FtsK_SpoIIIE
Flavi_DEAD
AAA_30
PhoH
AAA_29
AAA_33
TsaE
T2SSE
AAA_7
DAP3
Motif
Other DBs
NCBI-GeneID:
110634986
NCBI-ProteinID:
XP_021639850
LinkDB
All DBs
Position
Unknown
AA seq
731 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSISGKISKMNGAGGTPMNNNGNNNNLINRWTGKPYSQRYYEI
LEKRRTLPVWHQMEDFLTALKKNQVLVLVGETGSGKTTQIPQFVLEAVDIETPDKRRKMM
IGCTQPRRVAAMSVSRRVAEEMDVNIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT
DPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRHDLKLVVMSATLEAEKFQGYFNDA
PLMRVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMYEPTGDILVFLTGEEEIEDACRK
ITKEIGNLGDQVGPVKAVPLYSTLPPAMQQKIFESAPPPLTEGGPAGRKIVVSTNIAETS
LTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE
KSFNQDLQPQTYPEILRSNLANAVLTLKKLGIDDLVHFDFMDPPAPETLMRALEMLNYLG
ALDDDGNLTKLGEIMSEFPLDPQMAKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQ
KAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDSSWCYENFINHRALKAADNVRQQLVRI
TMRFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL
DHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLDNFPNCEAKRVLEKLYRKR
EREKEESKNRK
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagagaaaagtgagcttgtttgacgtggtggacgagacttcgatc
tccgggaagatatcgaaaatgaacggcgctggtggaacgccgatgaacaacaacggaaac
aacaacaatttgataaatcggtggactgggaagccttattcacagcgatactatgaaata
ttggagaagaggaggactctgcccgtttggcaccaaatggaggatttcttgacggctttg
aagaaaaaccaggtccttgttcttgtcggtgagactggtagtggaaaaactactcagatt
cctcagtttgttttggaagctgttgacatagaaacacccgataaacgtaggaagatgatg
attggatgcactcagcctcgtagagtggctgcaatgtctgtttctcgacgtgtggcggag
gagatggatgtgaatattggtgaagaggtcggttatagcatccgttttgaggactgtagc
agtgcaagaacagttttgaagtatttaactgatggtatgcttttaagagaggcaatgact
gatcctcttttggaaagatacaaagtcataattcttgatgaagctcatgaaagaactttg
gcaacagatgtgttatttggacttcttaaagaagttctaagaaatagacatgatctgaag
ctagttgtgatgagtgcaacactagaggcggagaagtttcagggttattttaatgatgca
cctctgatgagagttcctggtagacttcatccagtggagattttctatacccaggaacct
gaaagggattaccttgaggcagcaattcgtacagttgttcagatacatatgtatgaacct
actggggacatacttgttttcctcacaggtgaggaggagatagaagatgcatgccggaaa
ataacaaaagagatcggaaatttgggggaccaggtggggccagtgaaagcagtgcctttg
tattcaactcttccacctgccatgcagcagaaaatttttgaatctgcaccacccccattg
acagaaggtggccctgctggaaggaagattgtggtttcaacaaacatagcagaaacttct
ttgaccatagacggcattgtttatgttattgacccaggctttgctaagcaaaaggtttat
aacccacgagtgcgtgttgaatccttgttggtttccccaatatcaaaggcaagtgctcat
cagaggtctggccgtgctggaagaactcagcctggcaaatgtttcagactttacacagag
aaaagttttaatcaagatcttcagccacagacgtatcctgaaatattgcgatcaaacctt
gcaaatgcagttctaacactgaagaaacttggaattgatgatctggttcattttgatttt
atggacccgcctgctcctgagacattgatgcgggcattagagatgctaaattacctggga
gcattggatgatgatggaaacttgacaaagcttggggaaatcatgagcgagtttcctttg
gatcctcagatggcaaagatgctggtggttagtcccgaattcaactgctcaaatgagatt
ttgtcaatttctgcaatgctttcagtacccaattgctttgtccgccctagggaggctcaa
aaggctgctgacgaagcaaaagctaggtttggtcacatagatggggatcacctgacgctg
ttgaatgtgtaccatgcatacaagcagaacaatgaggattcatcttggtgctatgaaaat
tttatcaaccatcgagctctcaaggctgctgataatgtaagacaacagcttgtacgcatc
acgatgaggtttaaccttaagttatgcagcaccgacttcaacagccgtgactactatgtc
aacataagaaaggcaatgctagctggatattttatgcaggttgctcacctggaacgcact
gggcactaccttacagtgaaagacaatcaagtggtgcatttgcatccttcaaattgtctg
gaccacaagccagagtgggttatttataatgaatatgtcctgacaagccggaattttatt
cggacggtgacagatattcgcggtgaatggctagtagacatagcaccacactactatgat
ctagacaactttccaaattgtgaggccaagcgagttctggagaagctttatagaaagcgg
gagagagagaaggaagagagcaagaacagaaagtga
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integrated database retrieval system
