Hevea brasiliensis (rubber tree): 110638454
Help
Entry
110638454 CDS
T05150
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110638454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110638454
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110638454
mRNA degradation factors
5'-3' decay
Decapping complex
110638454
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
110638454
NCBI-ProteinID:
XP_021644706
LinkDB
All DBs
Position
Unknown
AA seq
835 aa
AA seq
DB search
MDYNRTHSTVLIFSPETLEVSVLMILLLRKTSVVMEGNESGGGIQEAPIVDDPNQFGDNS
TEGAVFDASQYAFFGKDLVEDVELGGLEDEVEDLPATEFDEEEFLFGRQEGEVVRSLSDI
DDLASTFSKLNKVVSGPRGAGVIGDRGSRESSSAAEWAQGEDFPNWLDQQQLLDPEGIQD
GKRWSSQPYASSARLLELKPLYRTSSYPEQQQQHHQHFSSEPILVAKSSYTSYPPPGGQS
PQASPNHSHLNIPYLGGGPQMAISLPNLSPFSSPQLQLTGLHHGSPHFGGNLSQFSSGPS
ANSRLPNQWVNHTGLYPGDHPNRLLQQQLSHQNGLMPPQLMPQMQPQQHRLHHPIQPSLG
HLSGMQSQIFTPHLSSSAPMMSKFEAVLLGDIRDQRPKSAQKGRQNLRYSQQGFDTNGQK
IDSVWSQFRSKYMSSDEIESILRMQLAATHSNDPYVDDYYHQACLAKKSAGAKLKHHFCP
THLRDLPPRARANTEPHAFLQVDALGRTPFSSIRRPRPLLEVDPPNSSISGGTDQKVSEK
PLEQEPMLAARVTIEDGLCLLLDVDDIDRFLEFNQLQDGGVQLRRRRQALLEGLAASLQL
VDPLGKNGHTVGLAPKDDLVFLRLASLPKGRKLLDRYLQLLSSGNDLMRIVCMAIFRHLR
FLFGGIPSDLGAAETTNNLARVVSLCARHMDLGSLSACLAAVVCSSEQPPLRPLGSSAGN
GASLILLSVLERATELLNELQDASNYNVTNRALWKASFDEFFGLLIKYCINKYDSIMQSS
LQDPAEAIKRELPMEILRASVPHTDDYQKKMMYDLSQCSLVSQDGCRMNSESVLS
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggattataatcgtacccattcaactgtgctgatattctctcctgaaaccctagaagtt
tcagtattaatgattttattgttaagaaaaacaagtgtagttatggaagggaatgaaagc
ggcggtggtattcaagaggctcccatagttgacgatcctaatcaatttggagacaactcc
acagaaggtgccgtgtttgacgcctctcaatatgcattctttggtaaagatcttgttgag
gatgtcgagttagggggattggaggatgaagtggaggacttgcctgcaactgagtttgat
gaggaagagtttctctttggtagacaagagggtgaggttgtaagatctctttctgatatt
gatgatcttgctagtacattttcaaagttgaacaaggttgtcagtggaccaaggggagca
ggagtaattggtgataggggatccagagaaagttcatctgctgctgaatgggcccagggg
gaggattttcccaactggttggatcaacagcagctacttgatcctgaaggtatccaggac
ggaaaaagatggtcctcgcagccttatgcttcttctgctcgccttttggaattaaagcct
ttgtacagaacatcttcataccctgagcagcagcaacagcaccatcaacacttctccagt
gagccaattcttgtggctaagtcttcttacacttcgtaccctccccctggtggacaatct
ccacaggcttcgccgaatcatagtcatctaaatattccatatcttggtggtggtccccaa
atggcaatttctttaccaaacctctcccccttttctagtcctcagcttcagttgacaggc
ttacatcatgggtcaccacattttggtggaaatttgtcacagttttcttctggtccatct
gcaaatagccggctacctaaccaatgggttaaccatacaggtttgtatccgggagatcat
cccaaccgtttgttgcagcaacaactatctcatcaaaatggtttaatgcctccacagttg
atgccacaaatgcagccacagcagcatagactgcatcatccaattcagccatcattaggc
cacttatctggaatgcagtctcaaatatttacacctcatctttcttcatctgcacccatg
atgagcaagtttgaagcagtgcttctgggtgatattagagatcagagaccaaaatcagct
cagaaaggtagacaaaatttgcgttattctcaacagggatttgatactaatggccagaag
attgacagtgtctggtctcagttcagatccaagtacatgtcatctgatgaaattgagagt
attctcagaatgcagcttgctgcgacacacagtaatgacccatatgtggatgattactat
caccaggcttgtcttgcaaaaaagtcagctggggcaaaactcaagcatcatttctgcccg
actcacttgagggatcttccccctcgagcacgggctaacacagagcctcatgcttttctc
caggttgatgcgcttggaaggacgcccttttcttcaattcgcagacctcgtccacttctt
gaggttgaccctccaaactcatctattagtggtggaactgatcagaaagtttctgagaaa
cccctagaacaggagccaatgcttgcagctagagtgacaattgaagatggtctttgcctc
ctcctggatgtagatgatattgaccgttttctagaatttaatcaacttcaagatggagga
gtccaattgagacgcaggaggcaggccttgttggaagggcttgcggcatccctgcaattg
gttgacccactcggaaagaatggacatactgtgggacttgctccaaaagatgatcttgtg
ttcttacgattagcttctcttcccaagggccggaagctgcttgacaggtaccttcagctt
ctttcttccggtaatgacctcatgcgaattgtctgcatggctatttttcgtcatctgagg
tttttgtttggaggtatcccatctgatcttggagcagcagagactacaaataaccttgca
agagttgtatcattatgtgcccgccacatggatcttggttcccttagtgcttgtcttgca
gcagttgtttgttcctcagagcagcctccacttcgcccccttggaagctctgctggaaat
ggggcttctctcattttattgtctgttcttgagagggcaactgaattattgaatgagctt
caagatgctagcaactataatgttacaaatcgggcactttggaaggcctcgtttgatgag
ttttttggcctacttataaagtactgcataaataaatatgatagtattatgcagtcttct
ttacaagatccagctgaagctattaagagggaactaccgatggagatccttcgagccagt
gttccccacacagatgactaccagaaaaagatgatgtatgatctttcccagtgttcctta
gttagtcaagatggttgtcgcatgaattctgaatcagtgttgagttga
DBGET
integrated database retrieval system
