Hevea brasiliensis (rubber tree): 110638574
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Entry
110638574 CDS
T05150
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110638574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbr03021
]
110638574
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110638574
Transcription machinery [BR:
hbr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110638574
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110638574
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
110638574
NCBI-ProteinID:
XP_021644863
LinkDB
All DBs
Position
Unknown
AA seq
1085 aa
AA seq
DB search
MEMESTRRSFDRSREPGLKKPRLAEDQTSLNARPFPQRPAAALPPSSSARLRVTTDRDSE
SNDSSRGGAYQPQSQQYQELVSQYKRALAELTFNSKPIITNLTIIAGENLHAAKAIAATV
CANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPPVHSSMRHL
FGTWKGVFPPQSLQVIEKELGFASAVNGSSSGAATSRPDAQSRRPQHSIHVNPKYLEIQR
LQQSGRAKGMANDLTVPIANSTEDTERPERAAVIGAGHSWVDPSVKMHNIQHSHRETSSE
PVQEKKIGAIYGDVEYSSDISRNSGLGIGRTGGRVAEQGYEKPWFGAGNRVTETIPGQRN
GFSAKHGFPNFSTSKSANVDLHLQPTKGIVSKSSSAMSDSWKNSEEEEFMWDMPSRLSDQ
DAANPSNNSRKDRWTPDDLEKLGFDNHLRKPLSAHEVLSRFDRETSADSLSTEQKEQVSF
GRHLSSPWRLKELHLTDGPIISGNSTMNTGQTEGYSATLGGLPVKASSSLPRMAVRPHMG
TSGSVLSANTLLGSGQQRIQSLGAASPSGQSPLRQHPPSPSFPARYPHKQLQNSVEQDLS
RPDYKAHQLSGNLVSSNVQLGNLQKLQPEDLPTSSPSPPFQRSRQNPILQPRQADTKQPE
PSDQIQRTLLNLVPKVGTPSTSGSSTPDHSSPLSAETSGQSNTSSLLAAVMNSGILSNIT
TVGLTNKSFQDVGKNPSESSIQPPLPSGPPPPQLTSSGTRVASASAPLSHDVTLVASNVS
ERKEEQPPLPPGPPPSSLQASNAVNKVANPISNLLSSLVAKGLISASKSGTSSTAPPQLP
TQSETQNPSITNSSNTSTSSLPVSSAVSHSSTTDEVSLPKSDAKNSVVLSEPTSAETKSL
IGLEFKSDVIRELHPPVISSLFDDLPHQCSICGLKLKLKERLDRHLEWHTWRKPEQDDMS
KVTRRWYAGLGDWVTGKVELPFGTESSVYTDELTGSINENEPMVPADEDQCVCVLCGELF
EDYYSYQRKKWMFKAAVHLTLASRDCGIGTTSENAEGPIVHVNCISESSSHDLGLASGIE
MDKDG
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagtactcgtagatccttcgatagatcaagggaaccgggcttgaagaaa
cctcgattggccgaagaccaaacaagccttaatgctcgacctttccctcagaggcccgct
gcagcactaccaccatcatcttctgcgaggttgagggttacgaccgatagagactcagag
agcaatgattcaagccgtggcggcgcgtaccagccgcaatcacagcaatatcaggagctt
gtgagccagtacaagagagctcttgctgagctcacttttaattcgaagcctataatcact
aacttgactattattgctggcgagaatctccatgcagcgaaggcgattgctgccactgtc
tgcgctaacattcttgaggttcccagtgaacaaaagctgccatcactttatcttttagac
agcattgtaaagaatattgggagagattacataaaatattttgctgccagactaccagag
gtattctgcaaggcctacaggcaggttgatcctcctgtgcattcaagtatgcggcatctt
tttggaacttggaaaggagttttccctcctcagtcacttcaggtgattgagaaggaactt
ggctttgcttctgcagttaatggttcatcttctggtgctgcaacatctaggcctgatgct
cagtcaaggcgcccacaacatagcattcatgttaaccctaagtacttggaaatacagcgt
cttcagcagtcaggcagggcaaaaggaatggctaatgacttgactgttcctatagccaac
tcaactgaggatacggagaggccggagagagcggctgttattggtgctggacactcatgg
gtggatccttctgttaaaatgcataacattcaacattctcatagagaaacatcaagtgaa
cctgttcaggagaagaaaattggtgcgatatacggagatgttgaatatagctctgacatt
tcaaggaactcgggcttgggaattggaagaacgggtggaagggttgccgagcaaggatat
gaaaaaccctggtttggagctggcaacagggtcacagaaacaatacctggccaaagaaat
ggtttcagtgcgaagcatggatttccaaatttctcaacatcaaagtctgctaatgttgat
ttgcatctacagccaacaaagggcattgtaagtaaaagcagcagtgcgatgtctgatagc
tggaaaaactctgaggaggaagagtttatgtgggatatgccttctaggttatcagatcag
gatgcagccaatccttctaataactccaggaaagaccgttggactcctgatgatttagag
aaattggggtttgacaatcatctcagaaaaccactgagtgcacatgaggttttgtcaagg
tttgatagagaaacttctgctgattctctatccactgaacagaaagaacaagtttctttt
gggcgccatttgtcctccccatggcgactaaaggagttgcatctaaccgatgggccaata
atttctgggaattctactatgaatacaggtcaaacagagggatactctgccactcttggc
gggttgcctgtgaaagcaagttcctctttgcccagaatggcagttcgaccacatatggga
acctcagggtctgtgttatcagcaaacacattattagggtcaggtcaacaaaggattcag
tcgctaggagcagcatcaccatctggacagtcaccattgcgccaacatccaccctcacct
tcatttccagcacgttatccacataagcaattgcaaaattcagtggagcaagacctgtct
cgtcctgattataaggcacatcaattgtcagggaatttagtttcttcaaatgttcagctt
ggtaacttgcaaaaactgcagcctgaagacttgccaacttcatctccttcaccacctttt
caacgaagtcgccagaatcctattttgcagccaagacaagcagacaccaaacagcctgaa
ccctctgatcagattcaaaggacactattaaatctagttcccaaagttggtactccatca
acttctggaagttctaccccagatcattcatctccacttagtgcagaaacttcaggacaa
tcaaacacaagtagtttgttggctgccgttatgaatagtggaatcctctccaatataacc
actgttggccttactaataaaagttttcaggatgttggtaaaaatccatcagagtcgagc
attcagcctcctcttccaagtgggcctccccctcctcaattaacatcttctgggacaagg
gttgcatcagcatcagctcctttgtcacatgatgtcacattagttgcctcaaatgtttct
gagaggaaagaagagcaaccaccactgcctcctggtcctccaccttcatctttacaagct
tcaaatgcagtgaataaggtagctaatccaatatcaaatcttttaagctcattagttgcc
aagggtttgatatctgcatcaaagtcggggacatcgtctaccgcaccacctcagttgcct
actcaatcagagacacagaacccaagcatcactaactctagcaacacatcaacttcttct
cttccagtttcttctgctgtttctcattcatccaccacagatgaagtgtcgttgcccaaa
tctgatgctaaaaactctgttgtgttgtctgaacccacatcagcagagacaaaaagtctc
ataggattggagttcaagtcagatgtaattcgagaattacatccacctgttataagttca
ctctttgatgatcttccgcatcaatgcagcatatgtggccttaaacttaagcttaaagaa
aggcttgataggcacctggagtggcatacttggaggaagccagaacaagatgatatgagt
aaggttacaaggagatggtatgctgggttaggggactgggttactggaaaggtagagctt
ccatttggaactgagtcttctgtttacacagatgaattaacagggtcaatcaatgaaaat
gaacctatggttcctgcagatgaagatcagtgtgtatgtgttttgtgtggtgagctgttt
gaagattattatagttatcagaggaagaaatggatgttcaaagcagcagtgcacttgaca
ctcgcttcaagggattgtgggataggaactacaagtgagaatgctgagggtccaattgtg
catgtgaattgcatatcagaaagctcaagtcatgacttgggactggcaagcggtattgaa
atggataaggatggataa
DBGET
integrated database retrieval system
