Hevea brasiliensis (rubber tree): 110640628
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Entry
110640628 CDS
T05150
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110640628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110640628
Enzymes [BR:
hbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110640628
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110640628
mRNA degradation factors
3'-5' decay
Ski complex
110640628
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
110640628
NCBI-ProteinID:
XP_021647693
LinkDB
All DBs
Position
Unknown
AA seq
1361 aa
AA seq
DB search
MISSNQNQSQKPMDRIQATNELAFRVGFSGYSGHLRVEPLSTVERTNPVKSLPDFILPPA
FPRENHESLKEHLEEEYLLPRLDSDEFSAEKAGRQWDFDWFERVKVIQEPSLPRSVVVPT
WELPFRRQKSGSEQGRWEPNSVQVDMSELTVGAPDSSPLPRVAGPAKDFVRGSINKRPFR
PGGLDDSQSLERILPSGATNGEWVHELLNGGPAQSTAPSLKQGLDLGELKAYPCSWNVYK
DQSPFNTTSKEKLNELSVQFDDLFKKAWEEDIITEYEGDGHLSKEDSPKSDDEVGKIDVF
ESVSETALSVLDEILSAESGGLASKSDGSVDAGGRQQKEAWALSGSSEWIAEHFYELVPD
MALNFPFELDTFQKEAIYYLEKGDSVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPI
KTISNQKYRDFCGKFDVGLLTGDISLRPESSCLIMTTEILRSMLYRGADIIRDIEWVIFD
EVHYVNDAERGVVWEEVIIMLPRHVNIVLLSATVPNKVEFADWIGRTKQKKIQVTGTAKR
PVPLEHCLFFSGELYKICENETFIPQGLKAAKDALKKNSTNTVGRGSLAMWDGGYGQKRE
YSNRNKQNKHSGSQNFGSFSGISGGNQNNGSGQNNWGSRRSEASLWLQLVNKLSKKSLLP
VVIFCFSKNRCDKSADCMSGTDLTSSSEKSGIRVFCDKAFSRLKGSDRNLPQIVRVQSLL
RRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLTKFDGKE
FRQLLPGEYTQMAGRAGRRGLDKIGTVVVMCRDEIPEENDLNHVIAGSATRLESQFRLTY
IMILHLLRVEELKVEDMLKRSFAEFHTQKTLPETQQILMRKLAQPTKAIECIKGEPAIEE
YYDMYLEAEEYGNQISEAVMQSSDAQRLLFPGRVVVVKSQSAQDHLLGVVVKGPSTNMKQ
YIVLVLKPDLPSSMQISNVQDKRSGDGPQAYLLMPKSKRGVEDYFYPSTSRKGSGAINIK
LPHQGSAAGVGYEVRAMDSKEFLCICKSKIKINPAGLLEDISNTAFSKTVQELLELKSEG
KKYPPALDPREGGYSVSDLKMKDMNLVEAYNKWTRLLQKMSMNKCHGCIKLEEHITLARE
IKKHKDEIDKLKYQMSDEALQQMPDFQGRIDVLKEIGCIDADLVIQIKGRVACEMNSGEE
LICTECLFENQLDDLEPEEAVAIMSAFVFQQRNTSEPSLTPKLSEAKKRLYNTAIRLGEL
QVHFKLLIKPEEYAQDNLKFGLVRVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETC
REFKNAAAIMGNSALYKKMEAASNAIKRDIVFAASLYITGV
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgatatcttcgaatcaaaatcagagccaaaaaccgatggatcgaatccaagcaacaaac
gagcttgctttccgggtcgggttctccggctacagtggccacctcagggtcgagcctctc
tccaccgtagagcgcactaaccccgtgaagtcgctccctgattttattcttccccctgcc
tttcctagggagaatcatgaatcgctaaaggagcatttagaagaggaatatctcttgcca
agattagactctgatgagttttcagcagaaaaagctggaaggcagtgggattttgattgg
tttgagagggtaaaagtaatacaggagccttccttgccacggtctgttgtagttcctact
tgggagttaccattcagaagacaaaagtcgggatctgaacaaggacggtgggaaccaaat
tcagtacaggtggatatgtcagaattaactgttggagctccagattctagtcccttgcca
cgagttgctggacctgcaaaggactttgtgagaggaagcatcaacaaacgcccttttcgc
ccaggaggtttggatgattctcaatctttagagagaattcttccatctggtgctactaat
ggcgaatgggtgcatgagctgctaaatggtggtccagctcagtccactgccccgagcctc
aagcaaggattagaccttggtgagcttaaggcatatccatgctcgtggaatgtttacaag
gaccaaagtccattcaataccacatcaaaggaaaagttgaatgagttgtctgtacagttc
gatgacttgttcaaaaaggcctgggaggaggatattattacagaatatgaaggagatggt
catttgtcaaaagaggattctccaaagtcagatgatgaagtgggcaagattgatgtgttc
gaaagtgtttctgagactgcattgtctgtgttggatgagattttgtctgctgaatcaggt
ggattggcatcaaaatctgatggaagtgttgatgctggtggccgccagcagaaagaggca
tgggctcttagtggcagtagtgaatggattgcagaacacttctacgaactagttcctgac
atggcacttaattttccttttgaattggatacattccaaaaggaggcaatatattatttg
gaaaagggagattctgtttttgtggcagctcatacctcagcgggaaagacagtagtggca
gagtatgcttttgctttggcatcgaaacactgcaccagagctgtctatactgctccgatt
aaaactatcagcaaccaaaagtatcgagatttttgtgggaagtttgatgttggccttctt
actggtgatattagcttgaggccagagtcttcttgtctcataatgaccactgaaatattg
aggtcaatgctttatcgaggtgctgatattataagagatattgaatgggtcatatttgat
gaagttcattatgtcaatgatgctgaaagaggtgttgtttgggaagaagttataatcatg
cttccaaggcatgtaaatattgtcctgctttcagccacggtaccaaacaaagttgaattt
gcggactggattggtcggacgaaacaaaagaaaatccaagttactggaactgcaaaaaga
ccagtcccattggagcattgccttttcttttctggagaactttacaaaatatgtgagaat
gaaacttttatacctcagggattgaaagctgctaaagatgcactcaagaaaaatagtaca
aatacagttggtagaggatcattagcaatgtgggatgggggttatggtcagaaacgtgaa
tactctaatcgtaacaaacagaataaacattctggttcacaaaattttggaagcttctct
gggattagtgggggaaatcaaaacaatggaagtggccaaaacaactggggttcaaggagg
tcagaggcttccctatggttgcagcttgttaacaagctctcaaagaaatctctattacct
gtagtaatattttgtttctcaaagaatcggtgtgataaatcagctgattgcatgtctgga
actgatctcactagtagttctgagaaaagtgggatccgtgttttttgtgataaagcattt
tcacgactgaaaggatctgaccgaaatttaccacagattgttagagttcagagccttctt
cgtagagggattggtgtacatcatgcaggactgcttccaattgttaaggaagttgttgaa
atgcttttttgccgtggtgtcattaaggtattgttttcaacagagacatttgctatgggg
gttaatgcccccgctagaacggttgtatttgataccttaacgaagtttgatggtaaggaa
tttagacaattgcttcctggagaatatactcaaatggcaggtcgtgctggcaggagagga
cttgacaaaattggtacagttgttgtgatgtgccgtgatgagatccctgaagagaatgat
ttgaatcacgttattgctggaagtgctaccaggcttgaatctcagtttcgattaacttat
attatgatcttacatctcctccgcgtggaggaattgaaggtggaggacatgttgaaaaga
agctttgctgagttccatactcaaaagacacttcctgaaacacaacaaattctgatgcga
aagcttgctcagcctaccaaagctattgaatgcataaaaggtgaaccagcgattgaagaa
tactatgacatgtacttggaagctgaggaatatgggaatcagatatcagaggcagtcatg
cagtcctctgatgcccagcgacttctttttcctggaagagtggtagttgtgaagtcgcaa
tcagcacaagaccacttgcttggagttgttgtgaaggggccttctacgaatatgaagcaa
tacatagttttagttctgaaacctgatctgccatcatcaatgcagatttccaacgtgcaa
gataaaaggagtggtgatggcccacaagcttatttgcttatgccaaaatcaaagcgtggt
gtagaagattacttttacccttccacttcgcgcaaaggatcgggtgctatcaacataaaa
ttaccacaccaaggcagtgctgctggtgttggttatgaggttagagcaatggatagtaaa
gaattcttatgtatatgcaaaagtaaaataaagattaacccggctggacttcttgaggat
attagtaatacagctttctcgaagacagttcaagagttgttggaactgaaatctgaagga
aaaaaataccctccagccttagatccacgggaaggtggctattctgtttcagatctgaag
atgaaagatatgaatcttgtggaagcatataacaaatggactaggctgctgcaaaagatg
tcaatgaataagtgtcatgggtgtataaaattggaggagcacataaccttggcaagagag
ataaagaagcataaagatgaaattgataagttaaaatatcaaatgtctgatgaagcatta
caacagatgccagactttcagggcaggatagatgttctgaaggaaattggttgtatagat
gctgaccttgtcatacaaattaaaggtcgtgttgcttgtgagatgaattcaggggaggag
ttgatatgtaccgagtgtttatttgagaatcagcttgatgacctggaacctgaagaagct
gtggccataatgtctgcgtttgtgtttcagcagaggaacacatctgagccttctcttact
cccaagttgtctgaagctaaaaagagactgtacaacacagcaataaggcttggagagctt
caagtccactttaaattactgataaaacctgaagagtatgcgcaggacaatctgaagttt
ggtcttgtgagagtagtttatgagtgggcaaagggaactccatttgctgatatctgtgag
cttactgacgttcctgaaggcttgatagtgcgaaccattgtcagactggatgagacatgt
cgagagtttaaaaatgccgctgctatcatgggtaattctgcactctacaagaaaatggaa
gctgcatccaatgcaataaaacgagacattgtttttgcagcaagcttgtacattacagga
gtttaa
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integrated database retrieval system
