Hevea brasiliensis (rubber tree): 110641284
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Entry
110641284 CDS
T05150
Name
(RefSeq) regulator of nonsense transcripts UPF2-like isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03013
Nucleocytoplasmic transport
hbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110641284
03015 mRNA surveillance pathway
110641284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110641284
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110641284
mRNA cycle factors
P-body specific factors
110641284
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
RskA_N
Motif
Other DBs
NCBI-GeneID:
110641284
NCBI-ProteinID:
XP_021648638
LinkDB
All DBs
Position
Unknown
AA seq
1201 aa
AA seq
DB search
MDHHEDEYRATGEPQAKQEDEEALARLEEMKKSVEAKVALRQSNLNPERPADSGFLRTLD
SSIKRNTAVIKKLKQINEEQREGLMDELRNVNLSKFVSEAVTAICDAKLRTSDIQAAVQI
CSLLHQRYKDFSPSLVQGLLKVFFPGKSGEDLEVDRNSKAMKKRSTLKLLLELYFVGVIE
DSSIFINIIKDLALTSVELLKDRDATQTNLTLLASFARQGRVFLGLPLSGQEIHEEFFKG
LNITADQKKIFKKAFSTYFDAVSELLQSEHASLRQMEHENAKILNAKGELTDENVASYEK
LRKSYEHLYRNVSSLAEALDMQPPVMPEDGHTTRVTTGDDSSSPAAGKDSSVLEALWDDE
DTRAFYECLPDLRAFVPAVLLGEAEPKANEQSARIQEQPSEVAPESDQGQPSLDNAESSA
DSGTLQEGKSIEKGKDKEEKDKEKAKDPEKEKGKEKDAERKGEIEKEKPKGLEGSNLDAL
LQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVKALFNVPRTSLELLPYYSRMVATLSTC
MKDVSSILVQMLDEEFNFLLNKKDQMNIETKIRNIRFIAELCKFRIAPAGLVFTCLKACL
DDFTHHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAY
YLCKPPERSARVSKVRPPLYQYIRKLLFSDLDKSSIEHVLRQLRKLPWSECDAYLLKCFM
KVHKGKYGQINLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLEINDYGMQQRRIAHMRF
LGELYNYELVDSSVIFETLYLILVFGHDTPERDVLDPPEDCFRIRMVIILLETCGHYFDR
GSSKRKLDRFLIHFQRYVLIKGALPLDIEFDLQDLFAELRPSMTRYSSIDEVNAALVELE
ENERTGSTDKVNSEKHFDAEKPSSRNASNAVSANGQNFVNGNEENGGIHEDVSDSDTDSG
SGTLEQEGHDDEELDAENHDDGSETQDDDEDDGGEPVSDEDDEVHVRQKVAEVDPVEAAN
FEQELRAVMQESMEQRRQELRGRPTLNMVIPMSVFEGSTKDHVRGVGGESGDEALDDETG
GSKEVQVKVLVKRGNKQQTKQMYIPRDCTLVQSTKQKEAAEFEEKQDIKRIVLEYNDREE
EENYGLGTQTLNWMPSGSNRVGSRGSMWGEGSSGRGAGSRHRHQHQHQHHSGSGVYHGRR
R
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccatgaagatgagtaccgtgctacaggtgaaccacaggccaagcaagaggat
gaggaagctctggctcgacttgaggaaatgaagaaatcggttgaggcaaaagttgctctt
cgccaaagcaatttgaatcctgaaaggcctgcagattcaggattcctcagaacactggat
tcaagcattaagcgaaatacggcagttattaaaaaattaaagcagataaatgaagagcag
agggaagggctaatggatgagttgcgaaatgtaaaccttagcaaatttgttagtgaagcc
gtgacagctatttgtgatgcaaagcttagaacttctgacatacaagcagcagttcagatc
tgctctttgcttcatcaaaggtacaaagacttttcaccaagtctggtacaagggcttttg
aaggtcttttttcctggaaaatcaggggaagacttggaagtggacaggaactcaaaggct
atgaagaagcggagcaccttgaaactgcttttggaactttactttgttggagttatagaa
gacagcagtattttcatcaatatcattaaggatcttgctcttactagtgtggaactcttg
aaggatcgagatgctactcagacaaatctgactctccttgctagttttgctcgacaaggg
agagttttcctaggactgcctctgtctggacaagaaattcatgaagagtttttcaagggc
cttaatatcacagcagatcagaagaaaatattcaagaaagcctttagtacgtatttcgat
gctgtatcagaactacttcagtctgagcacgcgtctctccgccaaatggaacatgaaaat
gcgaagattttgaatgctaaaggagagcttactgatgaaaatgttgcatcatatgaaaag
cttcgaaaatcttatgagcatttatatcgcaatgtttcttctttggctgaagcccttgac
atgcaacctccagtgatgccagaagatggccacactactagggttactactggagatgat
tcttcatcacctgctgccggcaaagattcttctgttcttgaagctttgtgggatgatgaa
gatactagagcattttatgaatgcttaccagatctcagagcatttgttccagcagtattg
ttgggagaagcagagccgaaagcgaatgaacaatctgcaaggattcaagagcaaccaagt
gaggtggcacctgaatcagaccaaggccaacctagtctagataatgcagagtcctctgca
gactctggtactttgcaggagggaaaaagcattgagaaaggaaaggataaggaagaaaag
gataaagaaaaagctaaagatccagaaaaagagaagggtaaagaaaaggatgcagagaga
aaaggagagattgaaaaggagaaacccaaaggtcttgaagggtcaaacttggatgcttta
ctgcaaaggcttcctggatgtgtcagtcgtgaccttattgatcaattgactgtagagttt
tgttacttaaattcaaagtcaaaccggaaaaagcttgtaaaggcattgtttaatgtacct
agaacgtctctagaactgctaccatactactctcgaatggttgccacactatcaacttgt
atgaaggacgtctcttccatccttgtgcagatgttagatgaggagttcaatttcttgtta
aataagaaggatcaaatgaacatcgaaacaaagatcagaaatattagatttattgcagaa
ctctgcaaatttagaattgcaccagctggccttgtcttcacttgtttgaaggcttgttta
gatgatttcactcatcataacattgatgttgcttgcaatcttcttgagacatgtggccgt
tttctgtatcggtctcctgaaactactgtgcggatggctaatatgttagagatattgatg
cgcttgaaaaatgttaaaaatttggatccccgccacagcacacttgtagaaaatgcttac
tatttgtgtaaaccccctgaaagatctgcacgagtgtctaaagtccggcccccactatat
cagtatattagaaaattgcttttctcggatcttgacaagtcttccattgagcatgtgctg
aggcaacttcgtaaattaccatggagtgaatgtgacgcgtaccttttgaagtgctttatg
aaagttcataagggaaaatatggtcaaataaacttaattgcttctcttactgctggtttg
agccgctatcatgatgaatttgctgttgctgttgttgatgaggttttggaggagattagg
cttgggctagaaataaatgactatgggatgcagcagaggcgaattgctcacatgcgattc
ttaggagagctatacaactatgaacttgtggattcatctgtaatttttgagacgctctat
ttgatccttgtttttggtcatgacacaccagagcgagatgtactggatccaccagaggat
tgtttccgcatcagaatggttatcattcttctggagacctgtggacactacttcgaccga
ggttcttctaagaggaaacttgatcgatttttaatacactttcagagatatgttctcatc
aaaggtgccctaccgcttgacattgaatttgacttacaggacttatttgctgaattacgc
cctagcatgactcgatactcatccattgatgaagttaatgcagctcttgtagaacttgag
gagaatgaacgaactggttcaactgacaaggtcaatagtgagaaacactttgacgctgaa
aaaccttctagcaggaatgcttccaatgccgtctctgcgaatggacaaaattttgtgaat
ggtaatgaggaaaatggtggaatccatgaggacgtcagtgacagtgacactgattcagga
agtggcacccttgagcaggagggacatgatgatgaggagttggacgcagagaatcatgat
gatggatcggagacacaggatgatgatgaagatgatgggggtgaacctgtttctgatgag
gatgatgaagtccatgtgagacaaaaagtagctgaggtggatccagtggaagctgcaaat
tttgagcaggagctaagggcggtaatgcaggagagcatggagcagcgcaggcaagagctg
cggggtcggccaacactaaatatggtgatacctatgagcgtgtttgaggggtccaccaaa
gatcacgtaaggggagttggaggggaaagtggtgatgaggcattggatgatgagacggga
ggaagcaaggaggttcaggtgaaagtacttgtgaagcgtggaaacaaacaacagacaaag
cagatgtacattcctagggattgcactcttgtgcagagcacaaaacagaaagaagcagct
gagtttgaagagaaacaagatattaagaggatagtcttggagtataatgatagagaagag
gaggagaattatggattaggaacccagacattgaattggatgcctagtggtagcaacaga
gttggcagccgtggcagtatgtggggggaaggaagcagtggtagaggtgctggatcacga
catcggcatcagcatcagcatcagcatcattcaggcagcggagtttatcatggcagaaga
aggtga
DBGET
integrated database retrieval system
