Hevea brasiliensis (rubber tree): 110643459
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Entry
110643459 CDS
T05150
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110643459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110643459
03012 Translation factors [BR:
hbr03012
]
110643459
Enzymes [BR:
hbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110643459
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110643459
Translation factors [BR:
hbr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110643459
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
HA2_N
DEAD
AAA_22
T2SSE
ATPase
nSTAND3
AAA_16
HJURP_C
AAA_19
PhoH
Myosin_head
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
110643459
NCBI-ProteinID:
XP_021651525
LinkDB
All DBs
Position
Unknown
AA seq
1141 aa
AA seq
DB search
MFYARMRNSKLRVFLVGCAKSVSSKSIIHSSSCHPPANLFALVLSLPRSSILTHPFSGYA
VEQFSDDEYECDFETHKASSVANVDEWKWKLSLLLRSETDQEIVSRDRKDRRDYEQISNL
ATRMGLYSEMYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVESLLQEHLDRTR
LISGEAGDRADDAKSIDQVEDFSLDENPDSFLDGSVMEKVLQRRSLRMRNMQRAWQESPE
GKKMMEFRKSLPAFKEKEKLLQAIARNQVIVVSGETGCGKTTQLPQYILESEIESGRGAF
CSIICTQPRRISAMAVADRVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRL
LSDRNLDGITHVFVDEIHERGMNEGRLPYRFSLSHLLMSATLNAELFSNYFGGAPKIHIP
GFTYPVSALFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQRQLAPRKRKNQIAALVEDAL
NKSSFENYSSRVRDSLASWMPDCIGFNLIEAVLCHICRKEGPGAVLVFMTGWEDISCLRD
QLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFERPSPDVRKIVLATNMAEASITINDIVF
VVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGECYHLYPKCVYEAFAE
YQLPELLRTPLNSLCLQIKSLQVGSIAEFLSAALQPPEPLAVQNAIDFLKMIGALNEKEI
LTNLGKYLSMLPVDPKLGKMLIMGAIFCCFDPVLTIVSGLSVRDPFLLPQDKKDLAGTAK
SRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILRD
AELIDADAGTNNRLSHNQSLVRAIVCSGLYPGIASVVHRETSMSFKTMDDGQVLLYANSV
NARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGALSCGVQAGHLKMLDGYID
FFMDPSLAECYLKLKEEFDKLIQEKLQDPTLDIHKEGKYLLLAVQELVSGDQCEGRFVFG
RESKKPKESRENSRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQ
FVGKPKKNKQLAERDAAIEALAWLTHTSENNQDEHDNSPPDVTDNMLKLLGKRRRSKRGS
G
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgttttatgctagaatgcggaattccaagttaagagttttccttgtgggatgcgccaag
tctgtatccagcaaaagcataattcactcatcaagctgccatccccccgccaatttgttt
gctttggttttgtctctccctcgttcttccattttgactcaccctttctctggctatgct
gttgagcagttctccgatgatgagtatgagtgcgattttgagacccataaggcatcttcg
gtggccaatgttgatgagtggaaatggaagctcagcttgctattgcgcagtgaaactgac
caagagattgtgtctagagatagaaaggacaggagggactatgagcagatttcgaacctt
gccacaaggatgggactatacagtgaaatgtatggaaaagtggtggttgcaagcaaggtt
cctcttcctaactataggccagatttggatgacaagcggccccaaagggaggtggtaatc
ccgctaagcttacaaaggagggtagagagtttactacaggaacatcttgatagaactcgg
ctaatttcgggagaagctggtgaccgtgcagatgatgctaagtctattgaccaggttgaa
gattttagtctggatgaaaatccagattcttttctggatgggtctgttatggaaaaggtt
cttcagagaaggagtttgcgaatgcgtaatatgcaaagagcttggcaggaatcacctgaa
ggcaagaagatgatggaattccggaaatctctacctgcattcaaggaaaaagaaaaactg
ctccaagcaatagcaaggaatcaggtcatagttgtatctggggagactggatgtggtaaa
acaactcaacttcctcagtatatattggagtcagaaattgaatctgggcgcggagcattc
tgcagtataatttgcacacagcctcgaagaatatctgctatggctgttgcagatagagta
tctgcagagagaggagagcctcttggtgaaacggttggttataaagttcgactagagggc
atgaaaggaaaaaacacccatctgcttttttgtaccagtggaattttacttagacgactg
ctaagtgacagaaacttggatggaataacccatgttttcgttgatgaaattcatgagcgt
ggcatgaatgaaggtagacttccttacaggttcagtttatcacatttattaatgagtgcc
actttgaatgcggaactcttctccaactattttggtggagcaccaaaaattcatattcca
ggttttacatatcctgtaagtgcactctttttagaagatgtactggaaatgacgggatat
aagttgacttcttttaatcaaattgatgactatggccaagagaaaatgtggaaaacacaa
aggcaacttgcaccaagaaaaaggaaaaaccagattgcggctcttgttgaggatgctctt
aataaatcgagctttgagaattatagctccagggtacgtgattctctagcgagctggatg
cctgattgcataggatttaaccttattgaggcagttttgtgccatatatgtcggaaggaa
ggacctggtgctgtcttggtattcatgactggctgggaggatattagctgtttaagggat
caacttaaagctcatcctcttttgggtgatcctaacagggttttgcttttaacatgccat
ggttctatggcaacctctgaacagaaacttatatttgagagaccttctcctgatgtacgt
aaaatagttcttgcaactaatatggcagaggcgagtattacaatcaatgacatagttttt
gtggtggattgcggaaaagctaaagagaccacatatgatgctttgaacaatacaccttgt
ctgctgccctcatggatatcacaagcttcagcgcggcaaagaagaggcagggctggccgc
gtgcagccaggtgaatgctatcacctctaccccaaatgtgtctatgaagcttttgctgaa
tatcaacttcctgaacttctgagaactcccttaaactctctttgcttgcaaataaaaagt
ttgcaggttggaagtatagcagaatttttgtcagcagcactccagcctccagaaccattg
gctgtccaaaatgccattgattttctgaagatgatcggtgcattaaatgagaaggagatt
ctgactaatcttgggaagtacttgtcaatgcttccagtagatcccaagcttgggaaaatg
ctaatcatgggtgctatcttttgttgctttgaccctgtattaacgatagtatccggtctt
agtgtcagggatcctttccttcttcctcaagacaaaaaagatttagctgggacagcaaaa
tctagattttcagcaaaagactatagtgatcacatggctcttgtacgtgcatatgaagga
tggaaagatgcagaacgagaagggtcagcatatgagtattgctggagaaatttcctctct
gcacaaactctacaagccattcattctctgaggaagcagttcagcttcattttaagagat
gctgagttaatagatgccgatgcaggaaccaacaacagattaagtcacaaccagtcattg
gttcgagcaatcgtatgctctggcctctatcctggcatagcatcagtagtgcacagagaa
acatccatgtctttcaagacgatggatgatggccaagttctattatatgcaaattctgtg
aatgcgcgctatcagactattccttacccatggctggtctttggtgaaaaagttaaggtc
aatacagttttcattcgcgattccactggtgtatctgattcaatattgatcctttttggt
ggtgctcttagttgtggtgtgcaggctggccatctgaaaatgttagatgggtatattgat
ttcttcatggatcctagtttggcagagtgctatttgaagcttaaggaagaatttgataag
ctgattcaagagaagcttcaagatcctaccctcgacattcacaaggaagggaaatacctc
ttgcttgctgttcaagaactggtttcaggagatcaatgtgaaggaaggttcgtctttgga
cgtgaaagcaagaagcctaaggagtcaagggaaaacagtagatttacgaaagatggaaca
aatcctaaaagcttgctacaaactcttttgatgagagctgggcactcccctccaaaatac
aaaacaaaacacctcaagacaaatgagtttagggcactggttgaattcaagggaatgcaa
tttgtgggcaaaccaaagaaaaacaaacaactggcagagagggatgctgctatagaagca
ctggcctggttgactcacacctctgagaacaatcaagatgagcacgacaattccccaccc
gatgtcacagacaacatgttaaaacttctggggaaacgccggagatcaaagcgtggctct
ggttga
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