Hevea brasiliensis (rubber tree): 110644232
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Entry
110644232 CDS
T05150
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110644232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110644232
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110644232
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110644232
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
110644232
NCBI-ProteinID:
XP_021652619
LinkDB
All DBs
Position
Unknown
AA seq
665 aa
AA seq
DB search
MSGILNSSLNSSASNLPDSNGRSFASSFSGQSGAASPVFHHTGTIQGLHNIHGSFNVPNM
PGTLASRNSTISNVPSGGVQQPTGSLSSGRFASNNLPVALSQLSHGSSHGHSGVTNRGIN
VIGNPGFSSNTNGVGGSIPGILPTSVGIGNRSAVPGLGVSPILGNAGPRITSSMGNMVGG
GNIGRSISSGGGLSVPGLASRLNLTANSGSGSLSVQGQNRLMSGVLPQGSPQVISMLGNS
YPTAVGPLSQSHVQAVNNLSSMGMLNDVNSNDSSPFDINNDFPQLTSRPSSAGGPQGQLG
SLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYTMDLHQKEQLHDNSMSMMQSQ
HFPMGRSAGFNLGGNYSSYRPQQQQQQHAPAVSSSGVSFSPVNNQDLLHGSDIFPSSHST
YHSQTNGPPGIGLRPLNSPNTVSGIGPYDQLIQQYQQHQNQSQFRLQQISAVNQPFRDQG
MKSVQAAQSAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPW
SDEPAKGDPEFSVPQCYYAKQPPALHQGYFSKFTVETLFYIFYSMPKDEAQLYAANELYN
RGWFYHKEHRLWFIRVPNVEPLVKTNTYERGSYHCFDPNTFEIIRKDNFVVHYEVLEKRP
ALPQH
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggatacttaattcttcgctaaacagttctgcttcaaatctacctgacagtaat
gggcgttcttttgcctcttctttctctggtcagtctggtgcagcatctcctgtttttcat
catactggaactattcaagggctgcataacatccacgggagctttaatgttcccaacatg
ccaggtacacttgcatcaagaaattctacaataagtaatgttccttctggaggagttcaa
caacctaccggaagcctctctagcggtcgctttgcatccaataatcttcctgttgcactc
tctcagttatctcatggcagctctcatggacattcaggagttacaaatagaggtataaat
gttataggaaatcctggatttagtagtaacacaaatggagttggtggttctattcctggg
attcttccaacctctgttggaattggtaaccggagtgctgtgccaggattgggagtatcc
ccaatattgggaaatgcaggccctcggattacaagttctatgggaaacatggttggtggg
ggcaacattgggaggagcataagctcgggtggaggattatctgtgcctggtctcgcatct
cggctaaatctaactgcaaatagtggatctggaagtttaagtgtgcaaggacaaaataga
ttaatgagtggtgtacttccacaaggatctccacaggtaatttccatgttgggaaattct
tatccaactgctgttggtcctctttcccaaagtcatgtccaagcagtgaacaatcttagc
tccatgggaatgttaaatgatgtgaactccaatgacagttccccttttgacataaataat
gacttccctcagttgacaagtcgtcctagttctgctggagggcctcaaggacaattgggt
tcgttacggaaacaaggtcttggagtcagccccattgttcaacaaaaccaagagttcagc
atccagaatgaagactttccagctctacctggatttaaaggtggtaatgctgattacact
atggatttgcatcagaaagaacaactgcatgacaacagcatgtcaatgatgcaatctcag
cacttccctatgggcaggtctgctggattcaacttggggggaaattattcatcttatcgt
ccgcagcagcagcaacaacaacatgctccagctgtcagtagtagtggggtctcgttttca
cctgtaaacaatcaagatcttcttcatggttcagatatatttccatcttcacattcgacc
tatcactcacagaccaacggaccacctgggattggactgagacctctgaactcaccaaat
acagtttctggtattggaccatatgaccagctcatccagcagtatcagcaacaccaaaac
cagtcccaatttcgattacaacaaatatcagctgtcaatcagccatttagggatcagggc
atgaaatctgtgcaagcagcgcaatctgcacctgacccgtttgggttacttggtttgtta
agtgttataaggatgagcgaccctgatctgacctcactggctcttggaattgatttaacc
actcttggactaaatttgaattcaacagaaaatctccacaagacatttggctctccatgg
tctgatgagccagctaagggtgatccagagtttagtgtgcctcagtgctattatgctaaa
caacctcctgctctacatcaaggatacttttcaaaattcacagtggaaacattgttttat
atattttacagcatgccaaaggatgaagctcaattatatgctgcaaatgaactttataac
agaggctggttttatcacaaagagcaccggttgtggttcataagagtccccaacgtagag
ccacttgttaagacaaatacatatgagagaggatcttaccactgttttgatccaaataca
ttcgaaataattcgcaaggataattttgttgttcattatgaggtattggaaaagagaccg
gccctacctcaacattaa
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