Hevea brasiliensis (rubber tree): 110644946
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Entry
110644946 CDS
T05150
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110644946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbr03021
]
110644946
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110644946
Transcription machinery [BR:
hbr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110644946
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110644946
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf-CCCH_2
zf-CCCH
zf_CCCH_4
zf-CCCH_3
Torus
eIF-3_zeta
Motif
Other DBs
NCBI-GeneID:
110644946
NCBI-ProteinID:
XP_021653618
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MDDTDGGLSFDFEGGLDSGLTNPTASMSAIPSDNSAVSAAAANNNSAVAAVSATDPSAPG
ANLPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKH
TNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQQLNSYNYGSSNKFFQQ
RGAGFQQHTDKSQFSQVPNNVGQGVAGKPSVTESTNAQQLQQQQQQQQQQQGQQSQQQAP
QAQTKNIPNGQPVQANRIATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLN
EAFDSAENVILIFSVNRTRHFQGCAKMTSKIGASIVGGNWKYAHGTAHYGRNFSVKWLKL
CELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMVCFSFRFFP
FLFINLGNNVRSQAR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggacgacacagacggtggtctcagcttcgacttcgaggggggccttgactctggcctc
accaaccctaccgcctccatgtccgccatcccttctgacaattccgccgtgtctgctgcc
gccgctaacaacaactccgccgtcgccgctgtatctgctacggatccatcggcacctggc
gccaacctgcctgggcggcggagcttccggcagaccgtctgtcggcattggctccgcagc
ctttgcatgaagggcgacgcctgcggctttctacaccaatacgacaagtcgcgaatgcct
gtttgccgcttttttaggctttacggagagtgccgggagcaggactgcgtgtacaagcac
accaatgaggatatcaaggagtgcaatatgtacaagttagggttttgtccaaatggtcct
gactgtcggtataggcatgcaaaatcgcctggacctccaccacctgtggaagaagtcctt
cagaagatccagcaattaaattcttacaattatggatcctcaaacaaattttttcaacaa
aggggtgctggttttcagcaacacacagataaatctcagttttcgcaagttcccaacaat
gtgggtcaaggtgtagctggaaaaccctcagttacagagtctactaatgcacagcagctt
cagcagcagcagcagcaacaacaacaacaacaaggacaacagtctcaacagcaagcccct
caggcccaaacaaaaaatattccaaatggtcagcctgttcaggcaaacagaatagcaaca
cctttgcctcaaggaatatctaggtattttattgttaaaagttgcaaccgtgaaaatttg
gaattgtctgtacaacaaggagtttgggcaactcaaaggagcaatgaagctaaactaaat
gaagcttttgactccgctgaaaatgtgattttaattttctcagtcaatcggactcgacat
ttccagggatgtgcaaagatgacatccaaaattggtgcttccattgttggggggaattgg
aaatatgcacatggaactgcacactatggacggaatttctcagtcaaatggttgaagtta
tgtgaattatcattccacaaaactcgccacttgaggaacccatacaatgagaacctacct
gtgaagatcagtagagattgtcaggagctagagccctcaattggcgagcagttagcttcc
ttactttatcttgagcctgacagtgaactcatggtatgcttttcttttcgtttctttcct
tttctcttcataaacctaggtaataatgtgagatcacaggctagataa
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