Hevea brasiliensis (rubber tree): 110649278
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Entry
110649278 CDS
T05150
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03013
Nucleocytoplasmic transport
hbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110649278
03015 mRNA surveillance pathway
110649278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110649278
Enzymes [BR:
hbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110649278
5.6.2.5 RNA 5'-3' helicase
110649278
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110649278
mRNA cycle factors
Common to processing body (P body) and stress granule
110649278
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
UvrD-helicase
NPHP3_N
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_25
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
110649278
NCBI-ProteinID:
XP_021659480
LinkDB
All DBs
Position
Unknown
AA seq
1257 aa
AA seq
DB search
MDSEQSNLYETASQPDTGTDAYTFLEFNTQGESDFEYPEFRSPVAWPTPSDSLAPTSSLS
AVDPATSDHRAAASSSDHHSDSPAVSPVSRRGVGSNSQGVDGIVAGMGGLNFEETGDEDA
YEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEV
CLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLTQ
WCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGVDDE
PQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYFVFP
KEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGI
SVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVESQNVRNTLPRRFGAPGLP
ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ
LAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL
SSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECL
IPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPS
LSEFPSNNFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNR
TEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVD
SFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNS
LLTHYKEHECLVEGPLNNLKQSMVQFQKPRKIYNDRRLFFGGGPGIVSNDSFGSVASSSP
NADRRSSRGRGSYMPPGPPNGTHKPGVHPTGFMPRVPISQFHGAPPSQPYAIPTRGAVHG
PVGAVPHVPSPGSRGFGAGRGNAGASIGSQAPHQQGTQQTIGNMGSAFNFPALENPNSQP
SVGGPLSQPGYVNNMPAQGLSQTFRDGFSMGGMSQDFLGDDFKSQGSHLPYNVADFSTQA
SQSGYAVDYVTQGAQGGFPGNFMNQNSQAGFSRFGSGNDFMSQGLFTQIGFNDPSQDDAS
QNHFGIANPNPLQSQGLMNSLYSQPFTHYNTQPLNLQSQQQPQQGQGSQNQKIHYNG
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atggattcggagcagagcaacctctatgaaacggcgtcgcagcccgacacggggactgac
gcctataccttcctagaattcaacacccaaggcgaatctgactttgaatatcccgaattc
cgctcacccgtggcttggccgaccccctccgattctcttgcgcccacttcctccttatca
gctgttgaccccgccacttcagaccaccgtgccgctgcttcctcctctgatcatcactct
gattcccctgcggtctctcctgtgtcgcgcagaggggttggaagcaacagtcagggggtc
gatgggatagtggctggtatgggagggttgaatttcgaggagacgggggacgaggatgca
tatgagttcgggaaaggggattttacggaacatgcgtgtaggtactgtggggtttcgaac
ccggcttgtgttgtgaggtgtaatgttccttcgtgtaggaaatggttttgtaattctaga
gggaacacgtccgggtcgcatatcgtcaatcacctggttcgtgcaaaacataaggaagtc
tgtctccataaagacagtcctctaggggaaacgatacttgaatgctacaactgtggatgt
cgaaatgtattccttcttggatttatatccgccaagacagaaagtgttgttgttctcctg
tgtagggaaccttgcttaaatgtcaatgcattgaaggacatgaactgggatctgactcaa
tggtgtccccttatcgatgataggtgctttctacagtggcttgtcaagatcccttctgaa
caggagcagctgagggcacgtcaaataagtgctcagcagataaataaagtagaagaactt
tggaaaacaaatcctgatgctacccttgaagatcttgagaagcccggtgttgatgatgag
cctcagcctgtagcactgaagtatgaagatgcatatcagtatcaaaatgtgtttgctcca
ctaattaagcttgaggcagattatgataaaatgatgaaagagtctcaaagcaaggacaat
gtcactattcgatgggatattggtcttaacaagaagcgcattgcatattttgtttttcca
aaggaggacaatgagctacgtcttgtacctggtgatgagttgcgactgcgttattctgga
gatgctgctcatccagcttggcagtcagttgggcatgtgatcaagttaactgcacaggag
gaagtagcacttgagcttcgtgctagtcagggggttcctgttgatgtaaaccatggcatc
agtgttgattttgtgtggaaaagtacaagctttgatcggatgcaaggggcaatgaaaact
tttgcagtggatgaaacaagtgttagtggatatatatatcaccatttgttgggccatgag
gttgagagtcaaaatgttcgtaatacactcccgcgtcgttttggtgcacctggtcttcca
gagctgaatgcatctcaagtttttgctgtaaaaagtgttcttcaaagacctataagcttg
attcaaggtccacctggcactggaaaaactgtcacttctgctgccattgtttatcacatg
gccaaacagggccagggacaggttttggtatgtgcaccaagtaatgtggctgtagatcaa
ctagctgagaagataagtgccactggcttaaaggttgttcgcctttgtgctaaatcaagg
gaagctgtgagttcccctgttgagcatctaacccttcactatcaggttaggcatctcgac
acttctgagaagagtgaacttcacaagttacaacaattgaaagatgaacaaggagaacta
tccagcagtgatgagaaaaaatacaaagcactgaagcgagcgacagagagggagatttct
caaagtgctgatgtaatttgttgcacttgtgttggtgctggagatcctcgactggcaaat
tttaggtttcgccaggtgcttattgacgagtctactcaggcaacagaacctgagtgtctt
attcctttagttcttggggcaaagcaggttgttcttgttggtgatcattgtcagcttggt
ccagtcattatgtgcaagaaagcagctcgtgctgggctagctcagtctctttttgaacga
cttgttttgcttggtgtgaaacctattagattgcaggttcaataccgcatgcatccatct
ctctcggaatttccatctaacaacttttatgaaggtaccctgcaaaatggtgtgactgtg
aatgagaggcagtcatcaggaatcgatttcccctggcctgtgcctaatcgtcccatgttc
ttttatgtccagatgggacaagaagaaataagtgccagtgggacatcctatctaaaccgt
acagaggcagcaaatgttgaaaaaattgtaactactttcttgaggagtggtgtggtccct
agtcagattggggtaataacaccatatgaggggcagcgagcatatatcgtgaactatatg
tcaagaaatggtgctctcagacagcaactgtacaaggaaattgaggttgcaagtgttgat
tcatttcaagggagggaaaaagattacattattttgtcttgtgttaggagcaatgaacat
cagggtattggatttctaaatgatcctcgaaggcttaatgttgctctaacacgagctaga
tacgggattgtcatccttggtaatcctaaagttctgagcaaacaacctctgtggaatagc
ttattgacacactacaaggaacatgaatgcttggttgaaggacctctaaataacttgaag
cagagtatggttcaatttcagaagcccaggaagatctataatgataggaggctcttcttt
ggtggtggaccaggaattgtatctaatgacagttttggttctgttgcctcatccagccca
aatgctgatagaagaagctctcgtggcaggggttcatatatgccacctgggccgcctaat
ggtacccataagcctggtgtgcatcctactgggttcatgcctagagttcccatttctcaa
tttcatggtgctccaccttctcaaccatatgctattcctactcgtggagctgtgcatggg
cctgttggagctgttcctcatgtcccttctccaggaagtcgaggttttggggctggccgt
ggcaatgctggtgcttctattggcagtcaagctcctcaccagcaaggcacacagcaaaca
attggaaatatgggatctgctttcaactttcctgccctggagaatccaaatagtcagcca
tccgtgggtggcccactatctcagcctggatatgttaataatatgccagctcaagggctg
agccaaacatttcgtgatggattttctatgggtggcatgtctcaggacttcttgggtgat
gacttcaaaagccagggatcacatcttccgtataatgttgctgacttctccactcaggca
tcacaaagtggatatgccgttgattatgtgactcagggagctcagggcgggttcccaggg
aactttatgaatcagaattctcaagctggattttctcgttttggttctggaaatgatttc
atgtctcaggggctgttcacccagattggcttcaatgatccctcacaagatgatgcatca
cagaaccactttggcatagccaatccaaacccacttcagtcccagggcttgatgaactct
ctctactcgcaaccctttactcactacaacacacagccactaaacttgcaatctcaacag
cagcctcagcagggtcaaggctcccaaaaccagaaaatccactacaatggttga
DBGET
integrated database retrieval system
