Hevea brasiliensis (rubber tree): 110650510
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Entry
110650510 CDS
T05150
Name
(RefSeq) pre-mRNA-splicing factor RSE1 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110650510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbr03021
]
110650510
03041 Spliceosome [BR:
hbr03041
]
110650510
03036 Chromosome and associated proteins [BR:
hbr03036
]
110650510
Transcription machinery [BR:
hbr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
110650510
Spliceosome [BR:
hbr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110650510
Complex B
110650510
Complex C
U2 SnRNP specific factors
110650510
Chromosome and associated proteins [BR:
hbr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
110650510
TFTC complex
110650510
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
110650510
NCBI-ProteinID:
XP_021661201
LinkDB
All DBs
Position
Unknown
AA seq
1386 aa
AA seq
DB search
MAVSEEECSNAKSRSSSPSANGAYYLAKCVLRGSVVLQVVYGHFRSPSSYDIVFGKETSI
ELVIIDDEGIVQSICEQPVFGTIKDLAVIPWNDKFHARSPQMQGKDLLAVLSDSGKLSFL
TFCREMHRFFPLTHVQLSNPGNSRQQLGRMLAVDSSGCFIATSAYVDRLALFSLSLSGGS
DIIDKQIFYPPENEGHTSFTRSVQRPIISGTIWSMCFISRDSSQPSKEHNPVLAIILNRR
GALLNELLLLGWNIREHYINVISVYVEAGPIAHDILEVPHSNGFAFLFRVGDALLMDLRD
AHNPCCVYRTSLNFLPTVVEEQNFVEEPYRVHDVDDDGLFNVAACALLELRDYDPMCIDS
EGGNVKSTSKYVCSWSWEPEINKNHRMIFCIDTGEFFMIEISFDIEGLKVNLSDCLYKGI
PCKSLLWVDGGFVAAIVEMGDGIVLKVENGKLLHKSPIQNIAPILDMSVVDYHDEKRDQM
YACCGVAPEGSLRIIRSGISVEKLLRTAPIYQGITGTWTLRMKVTDLYHSFLVLSFVEET
RVLSVGVSFADVTDSVGFQPDVCTLACGLVGDGLLVQIHQTAVQLCLPTKVAHAEGIPLS
SPVCTSWFPDNMSISLGAVGHDLIVVSTSNPCFLYILGVRLLSTYHYEVYELQHLRLLNE
LSCISIPQKYLERKRLSSSNFVDDNHAPALPVGVNIGNTFVIGTHRPSVEVVSFLPDEGL
KVLASGTISLTNTLGTAISGCIPQDVRLVLVDRSYVLSGLRNGMLLRFEWPPASSMSSLQ
LPCYGFPIDLCMENTGGGLSNMPATTFDPQTCAVDVMSKTMDDLPVNLQLIATRRIGITP
VFLVPLSDSLDADMIALSDRPWLVQTASHSLSFTSISFQPSTHATPVCSAECPKGILFVA
DNSLHLVEMVHSKRLNVQKFHLGGTPRKVLYHSESRLLLVMRTELSNDTSSSDICCVDPL
SGSVVSSFKLEPEETGKSMELVRVGNEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCL
EHLQNSDSGSMTFCSKAGSSSQRTSPFREVVGHTAEQLSSSSLCSSPDGSCDGVKLEETE
VWQLRLAYATKWPGMALALCPYLDHYFLASAGSTFYVCGFPNDNPQRVRKLAIARTRFTI
ISLTAYFTRIAVGDCRDGILFYSYHEDTRKLEQVYCDPSQRLVADCVLMDVDTAVVSDRK
GSIALLSCSNLSERNASPECNLTLSCAYYMGEIAMSIKKGSFSYKLPADDVLIGCDGFGV
NIDASNNTIMASTLLGSIIVFIPLTREEHELLEAVQARLVVHPLTAPILGNDHREFRSRE
NQVGAPKMLDGDVLAQFLELTSVQQEAILSLPLGQLDTVKTGSKSPLPIPVNQVVQLLER
VHYALN
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttcagaggaggagtgctcgaatgccaagtcccgatcgtcgtctccttcagca
aacggcgcatactacctggccaagtgcgttctcagaggaagcgttgttcttcaggtcgtc
tatggccacttccgctctccttcctcctacgacatcgtttttggcaaagagacatctata
gagttggtaataatcgatgatgagggcattgtgcagtcaatttgtgagcagcctgtattt
ggcacaattaaagatcttgctgtcataccttggaacgacaagttccacgcacgaagccca
cagatgcagggaaaagaccttttggctgtcctttccgattctgggaagctatcctttctc
acattttgcagggaaatgcacaggttctttcctttgacacatgttcaactttccaatcct
ggaaactcaagacagcaactaggaagaatgcttgctgttgattccagtggctgcttcatt
gctaccagtgcatatgtggatcgattggctctattctccctttctttatccgggggcagt
gatatcattgataagcaaatattttatcctcctgaaaatgagggacatacgagtttcacc
agaagtgtccagaggccaattatctctggtaccatatggagcatgtgctttatttcaagg
gattctagccaaccaagtaaggagcataatcctgtactagccattattctaaataggaga
ggcgcactcctaaatgagcttctattattgggatggaacattagagaacattatataaat
gttatttcagtttatgttgaagctggaccaatagcgcatgatattcttgaagttcctcat
tctaatggatttgcatttttgttcagggttggtgatgctctcttaatggatctaagagat
gctcacaacccctgttgtgtctatcggacgagcttaaatttcttgcccactgtagtggag
gagcagaattttgttgaagagccatatagggttcatgacgttgatgatgatggtttgttc
aatgttgctgcatgtgctttgctggagcttcgggattatgaccccatgtgtattgatagt
gaaggcggtaatgtaaaatcaacctcaaaatatgtgtgctcttggagttgggaaccagaa
attaataaaaatcataggatgatcttttgtatagacacaggagaattttttatgattgaa
atttcttttgatatagagggcctcaaagttaatctttctgattgtctgtacaagggtata
ccatgtaaatcacttttgtgggttgatggtggttttgtggctgctattgtggagatgggg
gatgggattgttctgaaagtggaaaatggaaaactactacataaaagccctattcaaaat
attgcaccaatcttggatatgtcagttgtggattaccatgatgaaaaacgtgatcaaatg
tatgcctgttgtggtgtggcccctgaagggtcattaaggattattaggagtggcataagt
gttgaaaaacttctaaggactgcacctatttatcaaggcattaccggtacctggacactt
cggatgaaagtaactgacttgtatcattcttttcttgtgctatcttttgttgaagagacc
agggtgctgtcagttggagtgagcttcgctgatgtgactgattcagttggtttccagcct
gatgtctgtactttggcatgtggacttgtcggtgatggtttgcttgtccaaattcaccaa
actgctgttcagctttgtttacccaccaaggttgcccatgctgaaggtatacctctgtct
tctccagtttgcacatcttggtttcctgataatatgagtatcagtttaggggccgttgga
catgatttgattgttgtatctacttctaatccatgctttttatacattcttggggtcaga
ttactttcaacttatcattatgaggtgtatgaattgcaacatttgagattgctgaatgag
ctatcctgcatttcgatacctcaaaaatatttggaacgaaaaagattaagttctagcaat
tttgtggatgataatcatgcacctgcccttcctgttggagttaacattggtaataccttt
gttattggcacacatcggccttctgtggaggtagtgtcttttctgcctgacgagggccta
aaagttcttgctagtggaacaatctcattaacaaatactctggggactgctattagtggt
tgcatccctcaagatgtaaggcttgtactggttgatcggtcttatgtcctttctggtttg
aggaatggaatgctgcttcggtttgagtggcctcctgcctcttcgatgtcttcattacaa
ttaccttgttatggatttccaattgatttatgcatggaaaacactggtggaggtttatca
aatatgcctgcaacgacttttgacccacagacatgtgctgttgacgtaatgagcaagaca
atggatgaccttcctgtcaatctacaattgattgccacccgtcgtattggcattactcct
gttttcctcgttcctctgagtgattctcttgatgcagacatgattgcactcagtgataga
ccatggttagtgcaaactgcaagccacagcctctcgtttacatcaatctcatttcagcca
tcgactcatgccacgcctgtatgttcggctgaatgcccaaagggaattttatttgttgca
gataacagtctacatttggttgaaatggtgcacagtaagaggctcaatgttcagaagttt
catcttggaggtaccccacggaaggtcctataccatagtgaaagtaggttgttacttgtg
atgagaactgaacttagcaatgacacaagttcatctgacatttgttgtgttgatccactc
agtggttcagtagtatcatcttttaaacttgaacctgaagaaacaggaaaatccatggag
ttggtgagggttggaaatgaacaggttttggttgttggaactagtctttcttctggtcca
gctataatgccaagtggtgaagctgaaagtacgaagggtcgtctaatagtcctctgcctt
gagcacttgcaaaattcagatagtggttcgatgacattctgttcaaaggctgggtcgtct
tctcaacgaacttcaccatttcgtgaagttgttggtcatactgcggaacagctatcgagc
agtagtctttgcagtagcccagacggtagctgtgatggagtcaaacttgaagaaactgaa
gtatggcagttacgattggcatatgcaaccaaatggcctggaatggcactggcactctgt
ccatatcttgatcattacttcttggcatctgctggtagtactttttatgtatgtggtttt
ccaaatgataatccccaaagagtgagaaagttagctatagcaaggacacgatttacaata
atatcattaactgcatatttcactagaattgctgttggtgattgccgtgatggtatcctt
ttttattcttatcatgaggatactagaaaactggagcaagtttattgtgatccatcacag
agattagttgctgattgtgtccttatggatgttgatacagcggtggtttcagatcgtaag
ggaagcattgctctcttgtcgtgttcaaatctttcagagcgtaatgcaagtccagaatgc
aacttgactttgagttgtgcatattatatgggtgaaatagccatgagcataaagaaggga
tcattttcatataaactccccgctgatgatgtgttgataggatgtgatggttttggtgtg
aatattgatgcctcaaacaacactataatggctagtacacttttgggaagcataatagtg
ttcattcctttgacaagggaagaacacgaactcctagaagctgtccaagccagacttgta
gttcatcctttgactgctccaattttaggaaatgatcatagagagttccgtagccgtgaa
aaccaggttggagcacctaagatgcttgatggtgatgtgctggctcaatttttggagcta
acaagtgtacaacaagaggcgatattgtcattacctcttggtcaactggatactgttaaa
acaggttcaaaatctcctctccctatcccagttaatcaagtcgtgcaactccttgagcgg
gttcattatgctctcaattaa
DBGET
integrated database retrieval system
