Hevea brasiliensis (rubber tree): 110652111
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Entry
110652111 CDS
T05150
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03013
Nucleocytoplasmic transport
hbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110652111
03015 mRNA surveillance pathway
110652111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110652111
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110652111
mRNA cycle factors
P-body specific factors
110652111
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
110652111
NCBI-ProteinID:
XP_021663316
LinkDB
All DBs
Position
Unknown
AA seq
518 aa
AA seq
DB search
MKGQSEKTKVVVRHLPPTISLVMFMEQIDFAFAGRYNWVSFRPGKNSQKHQSYSRAYIDF
KRPEDVIEFAEFFNGHLFVNEKGTQFRAIVEYAPSQRVPKQWSKKDGRECTILKDHAYLE
FLESISKPAENLPSAEIQLERREAERAGAAKDAPIITPLMDFVRQKRAAKSGSRRILANG
KLSRRAGASGSPSSSSSKRSSDKKRLSTTMYVLRDSAKSTSGKEKSTYILVPKRDDQHLS
DKAVTLASASGTEVLEDESGISGIADARKKKILLLKGKEKEISTLSGGMSQQNAASFDKN
QTSPALKQSQRREASGRIIRSILLNKDSRQNQSSGVQSEQQNQTSNFEKDKRPPRPQHVQ
LILKDANGDSDDKVVGNDLHSFSGEKQEKRTRSKDRPDRGIWAPLRRSDESYASDESILS
SASQSAQSGVDSSQGNLGDTKVDPLNSRSGEVKTLGSGRGGHSSLDNGSHKHFGRRGPHT
GRDVDGSSGEGKLSKRGVASGYGSHEKQIWVQKPNSGS
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtcaatctgagaagacgaaggtggtggtgcgccacttgccaccgacgatttct
ctggtcatgttcatggagcaaatcgactttgcctttgctgggcgttataactgggtttcg
ttccgtcctggcaagaacagccagaaacatcaatcctattctagagcctatattgacttc
aaaaggccagaagatgttattgagtttgcagagttctttaatggccatctcttcgtcaat
gagaagggcactcagtttagggctattgttgaatatgctccttcgcagcgtgttccaaag
cagtggtctaagaaagatggccgtgagtgcacaatattaaaagatcatgcgtatttggag
ttcctagaatcaatatcaaagcctgccgagaatcttcccagtgcagagatacaattggaa
agaagagaagctgaaagagctggtgctgcaaaagatgctcctattattacacccttaatg
gactttgtccgacagaaaagagctgcgaaaagtggatctcggagaatattggctaatggg
aaacttagcagaagggctggtgcaagtggaagtcctagctcatcctcatccaaacgaagt
tctgacaagaagaggctttcaaccacaatgtatgtgttgagggactctgcgaaaagcaca
agtggaaaagaaaaatcaacgtacattttggttcctaagcgagatgatcagcatctttct
gataaagctgtaactttagcttctgcatcaggaactgaagtattagaagatgaaagtgga
atttctggaattgctgatgccaggaaaaagaaaatcctgctgctgaaagggaaagagaaa
gaaatttcaacattgtctggtggcatgtcacagcagaatgcagcatcatttgataaaaat
cagactagccctgctctcaaacagagccagcgacgcgaggccagtggcaggataatcaga
agcatacttttaaacaaggactcacgccaaaaccaatcttctggggtccagtctgagcag
caaaatcaaacctcaaattttgaaaaggacaagcgccctcctcgtcctcagcatgtgcag
ctgattttgaaggatgcaaatggtgattcagatgacaaggttgtgggtaatgacttgcat
agtttttctggtgagaagcaggaaaagcgcacaagaagcaaggatagacctgatcgtggt
atatgggctcctcttcgtcgatcggatgaatcatatgcaagtgatgaatccatattgtca
tctgcatctcaatctgcgcaatcaggtgtagattcttctcaaggaaatcttggagataca
aaagttgatccattaaattcaaggagtggagaagttaaaacccttggaagtggacgtggt
ggtcactcttctttagataatggatcacataaacattttggtcggaggggacctcataca
ggaagagatgtggatggctcatctggtgaagggaagctttcaaagagaggtgttgcttct
ggttatggttcccatgagaagcaaatctgggttcaaaaaccaaattctggttcttag
DBGET
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