Hevea brasiliensis (rubber tree): 110654042
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Entry
110654042 CDS
T05150
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03013
Nucleocytoplasmic transport
hbr03015
mRNA surveillance pathway
hbr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110654042
09122 Translation
03013 Nucleocytoplasmic transport
110654042
03015 mRNA surveillance pathway
110654042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110654042
03041 Spliceosome [BR:
hbr03041
]
110654042
Enzymes [BR:
hbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110654042
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110654042
Spliceosome [BR:
hbr03041
]
Complex C
Other components
EJC/TREX
110654042
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110654042
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
110654042
NCBI-ProteinID:
XP_021665599
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEEEKAPDSVAAKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVSALV
LCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LARDKELSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLLECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaacaagggacaacgatgcttacgaggaggagcttctcgactacgaggaagaa
gaagagaaagccccagactctgttgctgccaaagtcaatggcgaatccgccaagaaaggc
tatgttggaatacacagttccggattcagagactttcttttgaagccagagcttctacgg
gccattgtggactcgggatttgagcatccttctgaagttcaacatgagtgtatccctcaa
gccatcttgggcatggatgttatctgccaagctaaatctgggatggggaagactgctgta
tttgttctgtctactcttcagcaaattgagcctacatctggccaagttagtgcccttgtt
ttgtgtcatactagggagttggcttaccagatatgtcacgagtttgagaggttcagtacg
tacttgccagataccaaggttgctgtattttatggtggtgtcaatatcaaaattcacaaa
gatctattgaaaaatgaatgcccacatattgttgttgggacacctggaagaatactagcg
ctagcgagagataaggaactttcattgaagaatgtgaggcactttattcttgatgaatgt
gacaagatgcttgaatcacttgacatgaggagagatgtgcaggagatcttcaagatgact
cctcatgataagcaagttatgatgttttctgcaacactcagcaaagaaatccgcccagtt
tgcaagaaatttatgcaagatcctatggaaatttacgttgatgatgaagccaagttgacc
cttcatggtcttgtacagcactacatcaaattgactgagctggagaagaaccggaagttg
aatgatcttcttgatgcactggactttaatcaagttgttatctttgtcaaaagtgtgaac
agagcagctgagcttaacaagttacttttggagtgcaattttccctcgatttgcatccat
tctggcatgtcacaagaagaaaggttgacacgctacaagggattcaaggaggggcataaa
aggattcttgtggccacagatttggttggtcggggaattgacattgaacgagtaaacatt
gttatcaactatgacatgccagattctgctgacacttatctacacagagttggtagagct
ggtagatttggcactaaagggcttgcaattacatttgtatcatcggcgtcagactctgat
gttctaaatcaggttcaggagaggtttgaggtggacataaaggagcttcctgagcagatt
gatacatctacatacatgccttcttag
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integrated database retrieval system
