Hevea brasiliensis (rubber tree): 110655732
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Entry
110655732 CDS
T05150
Name
(RefSeq) protein RRP6-like 2 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110655732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110655732
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
110655732
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
110655732
NCBI-ProteinID:
XP_021667850
LinkDB
All DBs
Position
Unknown
AA seq
905 aa
AA seq
DB search
MSEDAMNIDQTSKSPSKSQTLQTLNTGPLSSSLSSLSGSCRTIPSNKDFHFYYNFDEFKL
PVQQISAKSQSLLESISSSNRVFKDKLQFPGDVDIDDAYDWLVNVNDEILERFDASVDEF
RSIRKKEEETGRVSGMDTESGFQLVYGKKKKGLVNSSSGSASDLVCDSGVKVADIKAKAV
KAKVPFHIPTIKKPQDEYNILVNNSNQRFEHVWLQRSEDGSGFVHPLEKLSVLDFVDKST
GNLEPVSPLPLERTPFKLVEEVKDLKELAAKLRSVDEFAVDLEHNQYRSFQGLTCLMQIS
TRTEDFIVDTLKLRIHVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFGIYICNLFDTGQ
ASRVLKLDRNSLEYLLHHFCGITANKEYQNADWRLRPLSNEMLRYAREDTHYLLYIYDLM
RTMLLSMPNGTESSDSPLLEVYRRSYDVCMQLYEKELLTESSYLHIYGLQNAGFNAQQLA
IVAGLFEWRDIVARAEDESTGYILPNKTLLEIAKQMPVTPQKLRRVLKTKHPYVERNLGS
LVNIIRHAMQNTAEFEAAAQLLKDGHTETASLENIELNDNCEGFAADKHTNLETAGTETI
YDGNRNTLQATSPQLRKGPLETKICRDQQGGSCTRHGENGVESSSNVSELHRENFPVSLR
NMDPVTRDTGATVQVLKKPTGAFGAMLGSASAAAKRRFDIDKKDKEEIKLERIRNSVNLP
FHSFLGRNDPKPVVEEPTTVSEIPHVEESFAVPLASSNLEEIIVLDDDSDVEVLENDDSK
IKDSHGDSKADKERASLSDLSTSFQKCFQSSNQNRAIEKTRKSLEPTGLLKLKPFDYAAA
IRFGKDHKEKSKQVGDKDQSSLDSVSRKRSSVVHGVEKDDGTKEFPQGRRRQAFPATGNR
SATFR
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagatgctatgaacattgatcaaacttcgaaaagcccttccaaatcccaaact
ttacaaaccctaaacacaggaccgctatcttcttcactatccagtctttcaggctcgtgt
cgtacgatcccttcaaacaaagatttccatttttactataacttcgatgaatttaagctt
cctgtccaacaaatttccgcgaaatcgcaatcactgctcgaatcaatcagctcctccaat
cgcgtttttaaggataaacttcagtttcctggagatgttgatattgatgacgcttacgac
tggcttgttaacgttaacgatgagatcttggagcgttttgacgcttctgtcgatgaattc
cggagcatcagaaagaaggaagaggaaactggtcgggtatcggggatggacacggagagc
ggatttcagttggtgtatgggaagaaaaagaagggtttagtgaattcgagtagtggctcg
gcgagtgacttggtgtgtgattctggagtgaaggtagctgatattaaggcaaaggcagtg
aaagcaaaggtcccgtttcatatacctacaataaagaagcctcaagacgagtataatata
ttggtgaataattcgaaccagcggtttgagcatgtttggttgcagaggagtgaggacggg
tcgggatttgttcatcctctggaaaagctgtctgttttggattttgtggataaaagtact
gggaatcttgagcctgtatcaccactccccttggagcgtaccccattcaagcttgtggaa
gaagtcaaagatctgaaggagctggcagctaaattgcgcagtgtagatgaatttgcggtt
gatctggaacataatcagtatcgctcattccaagggttgacatgcttgatgcaaatttct
accagaactgaggattttattgtagatactttaaagcttcgaatacatgttgggccatac
cttagggaagttttcaaggatcccaccaagaaaaaggtcatgcatggagcagatcgagat
attatatggcttcaacgggactttggcatatatatctgcaatctgtttgacactggacag
gcctcaagagtattgaagctggatagaaatagtttggagtatcttttgcatcacttttgt
ggaatcactgccaacaaagaataccagaatgcagattggagattacgccctctttctaat
gagatgcttagatatgctagagaagatacccactatctgttgtatatctatgatttgatg
agaaccatgttgctttcaatgcctaatggcactgaaagttctgatagtcctctattggag
gtctacagacgcagttatgatgtgtgcatgcagctttatgagaaggagcttttgacagaa
agttcatatctccacatttatgggttgcagaatgctggtttcaatgctcagcagcttgcc
attgttgcaggactctttgagtggagagatattgttgcccgtgctgaagatgagagcaca
ggctatatattaccaaacaaaactcttcttgaaattgccaaacagatgcctgttacgcct
caaaagttgcgtcgagtattgaaaacaaagcacccatatgttgagcgaaaccttggttcc
cttgttaacataattaggcatgccatgcaaaatactgccgagtttgaagctgctgctcaa
cttttaaaggatggacacactgaaacggcctcactggaaaacatagaacttaatgataat
tgtgaaggctttgccgctgataagcacacaaatctggagactgctggaacagagaccatt
tatgatggcaataggaatactctccaagcaacttctccacagctcagaaaggggcctttg
gagacaaagatttgcagagatcaacaaggaggctcttgtacgcgtcatggtgaaaatggt
gttgaatccagtagtaatgtttctgagcttcacagagaaaacttccctgtttcactgagg
aacatggatccagttacgcgtgatactggagcaactgttcaggttttaaagaagccaact
ggtgcttttggagcaatgctgggaagtgcaagtgcagccgcaaagagaaggtttgatatt
gacaaaaaggacaaagaagagatcaagctggaaaggatcaggaattctgtaaatcttcca
ttccattcatttttgggcagaaatgatccaaaaccagttgtggaagagcccactacagtt
tcagaaattccacatgttgaagaatcttttgctgtcccactggccagttccaatttagaa
gaaattatagtgttggacgatgattcagatgtagaggtattagagaatgatgattcaaaa
atcaaagattctcacggggatagcaaagcagacaaagaacgtgcatctctctctgatctt
tctacaagcttccaaaagtgcttccagtctagcaatcaaaatagagcaattgaaaaaacc
cgaaaatctctagaaccaactggccttctaaagttgaagccatttgattatgctgctgcg
atcagatttgggaaagatcacaaggaaaaatcaaaacaagtgggtgacaaagatcagagc
tcacttgattctgtcagtaggaaaagaagttcggttgttcatggagttgagaaagatgac
gggaccaaagaatttccacaaggtagaagacgtcaggcttttccagccactggaaatcga
agtgcaacttttcgatga
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